HHsearch alignment for GI: 254780334 and conserved domain: PRK11308
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional.
Probab=97.73 E-value=0.00039 Score=49.75 Aligned_cols=137 Identities=22% Similarity=0.329 Sum_probs=74.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHH-------------
Q ss_conf 8578708999549875188999999999850398199998646----30478888752015775100-------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVY------------- 148 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~------------- 148 (479)
T Consensus 37 ~i~~GE~lgiVGeSGsGKSTL~~~l~gl~~p~~G~I~~-~G~dl~~~~~~~~~~~r~~i~~VfQ~p~~sLnP~~~v~~~l 115 (327)
T PRK11308 37 NLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYY-QGQDLLKADPEAQKLLRRKVQIVFQNPYGSLNPRKKVGQIL 115 (327)
T ss_pred EECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEE-CCEECCCCCHHHHHHHHCCEEEEEECCHHHCCHHHHHHHHH
T ss_conf 98899999999998319999999995699988637998-99955779999999975577999868634338034243433
Q ss_pred -----EECCCCHH-------H---------------------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf -----00347889-------9---------------------------99999731698289972168766542044556
Q gi|254780334|r 149 -----IAIETNVE-------D---------------------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 149 -----~~~e~~l~-------~---------------------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
T Consensus 116 ~e~l~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~ryP~eLSGGq~QRv~IArA-L~~~P~lLi~DEPTsaLD~------- 187 (327)
T PRK11308 116 EEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARA-LMLDPDVVVADEPVSALDV------- 187 (327)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCCCCCH-------
T ss_conf 57788614899999999999999870456656645764479999999999999-8428989998478654699-------
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 3679999999999975307978999863036654331145787753027851
Q gi|254780334|r 190 TVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 190 svsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 188 --~~q~~Il~ll~~l~~~~~~t~l~ITH--------Dl~~v~~iaDri~VMy 229 (327)
T PRK11308 188 --SVQAQVLNLMMDLQQELGLSYVFISH--------DLSVVEHIADDVMVMY 229 (327)
T ss_pred --HHHHHHHHHHHHHHHHCCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf --99999999999999700976999869--------8999998699899998