HHsearch alignment for GI: 254780334 and conserved domain: PRK13343
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional.
Probab=97.75 E-value=0.00063 Score=48.20 Aligned_cols=167 Identities=15% Similarity=0.233 Sum_probs=93.1
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH---HCCCCCC
Q ss_conf 6632378124888865985787089995498751889999999998503981999986463047888875---2015775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ---RLNTINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~---Rl~~~~~ 145 (479)
T Consensus 143 ~epL~TGIkaID~l~--pigrGQR~gIfg~~GvGKT~L~~~~I~nq~~~~vi~Vyv~IGer~~ev~~~v~~l~~~gal~~ 220 (502)
T PRK13343 143 TEPLQTGLKVIDALI--PIGRGQRELIIGDRQTGKTAIAIDAIINQKDKDVICVYVAIGQKASTVARVIDTLREHGALEY 220 (502)
T ss_pred CCCCCCCEEEEECCC--CCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHCCCCHH
T ss_conf 754312606740556--646785775136788880489999999725788749999960451659899999876485131
Q ss_pred CHHEECCCC---H---------HHHHHHHHHCCCCCEEEECHHHHHH---------H---HHHCCCCCCHHHHHHHHHHH
Q ss_conf 100003478---8---------9999999731698289972168766---------5---42044556367999999999
Q gi|254780334|r 146 SVYIAIETN---V---------EDIIATLITNEKPDLVIIDSIQTLW---------S---QTAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 146 ~i~~~~e~~---l---------~~il~~~i~~~~~~~vVIDSIQtl~---------~---~~~~s~~GsvsQvre~~~~L 201 (479)
T Consensus 221 tvvV~ata~~p~~~r~~ap~~a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~---~srL 297 (502)
T PRK13343 221 TTVVVAEASDPPGLQYLAPFAGCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYL---HSRL 297 (502)
T ss_pred HEEEECCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHHH
T ss_conf 2245237789868875556652025799996699679999566899999989999748998766769458877---2689
Q ss_pred HH-HHH---HC---CCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEE
Q ss_conf 99-753---07---9789998630366543311--45787753027851
Q gi|254780334|r 202 IQ-YAK---KN---GVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFE 241 (479)
Q Consensus 202 ~~-~AK---~~---~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~e 241 (479)
T Consensus 298 lERa~~~~~~~ggGSITalp~V~-~~~dDis~pIp~~v~sItDGqIvLs 345 (502)
T PRK13343 298 LERATKLSPELGGGSLTALPIIE-TQAGDLAAYIPTNLISITDGQIFLD 345 (502)
T ss_pred HHHHHHCCCCCCCEEEEEEEEEE-CCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 98887526889984664516997-2488756634565652226169972