HHsearch alignment for GI: 254780334 and conserved domain: PRK13849
>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=97.64 E-value=0.00078 Score=47.50 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=55.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CHHHHHHHHHHCCCCCCCHHEECCCC---HHHHHHHHHHCC
Q ss_conf 8999549875188999999999850398199998646--30478888752015775100003478---899999997316
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE--AIGQIRLRAQRLNTINSSVYIAIETN---VEDIIATLITNE 166 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE--s~~Qi~~Ra~Rl~~~~~~i~~~~e~~---l~~il~~~i~~~ 166 (479)
T Consensus 4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~-~~~~ 82 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYED-AELQ 82 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHH-HHHC
T ss_conf 999618998769999999999999789959999689986889999876525898877523405652578999988-7536
Q ss_pred CCCEEEECHH
Q ss_conf 9828997216
Q gi|254780334|r 167 KPDLVIIDSI 176 (479)
Q Consensus 167 ~~~~vVIDSI 176 (479)
T Consensus 83 ~~D~VIIDtp 92 (231)
T PRK13849 83 GFDYALADTH 92 (231)
T ss_pred CCCEEEECCC
T ss_conf 9988998189