HHsearch alignment for GI: 254780334 and conserved domain: PRK13894

>PRK13894 conjugal transfer ATPase TrbB; Provisional.
Probab=97.40  E-value=0.0052  Score=41.53  Aligned_cols=145  Identities=15%  Similarity=0.184  Sum_probs=81.1

Q ss_pred             HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHH
Q ss_conf             88865985787089995498751889999999998503981999986463047888875201577510000347889999
Q gi|254780334|r   80 DRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDII  159 (479)
Q Consensus        80 DrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il  159 (479)
T Consensus       139 a~~L~~~V~~r~nilI~G~TgsGKTTll~all~~i~~~~p~eRivtIED~~EL-~~~~~n----~v~~~~~~~vt~~~Ll  213 (320)
T PRK13894        139 REAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI-QCAAEN----YVQYHTSIDVNMTALL  213 (320)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHH-CCCCCC----EEEEECCCCCCHHHHH
T ss_conf             99999999728758998588865689999998632026952017752587880-787777----3576447886899999


Q ss_pred             HHHHHCCCCCEEEECHHH-----HHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHH
Q ss_conf             999731698289972168-----7665420445563679-----999999999975307978999863036654331145
Q gi|254780334|r  160 ATLITNEKPDLVIIDSIQ-----TLWSQTAESSPGTVIQ-----VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRV  229 (479)
Q Consensus       160 ~~~i~~~~~~~vVIDSIQ-----tl~~~~~~s~~GsvsQ-----vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~  229 (479)
T Consensus       214 ~~aL-R~rPDRIivGEvRg~Ea~~~l~A~nTGH~Gs~tTiHA~sa~~al~Rl~~l~~~~~~~---------~~~v--~~~  281 (320)
T PRK13894        214 KTTL-RMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNAKAGLDRLAMLISMHPDS---------PKPI--EPL  281 (320)
T ss_pred             HHHH-CCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCC---------HHHH--HHH
T ss_conf             9973-679985876654748999999999669987205346799999999999998636787---------8999--999


Q ss_pred             HHHHHHEEEEEE
Q ss_conf             787753027851
Q gi|254780334|r  230 IEHMVDAVLYFE  241 (479)
Q Consensus       230 LeH~VD~vl~~e  241 (479)
T Consensus       282 ia~avdvVV~i~  293 (320)
T PRK13894        282 IGEAVHVVVHIA  293 (320)
T ss_pred             HHHHCCEEEEEE
T ss_conf             998689999998