HHsearch alignment for GI: 254780334 and conserved domain: PRK13894
>PRK13894 conjugal transfer ATPase TrbB; Provisional.
Probab=97.40 E-value=0.0052 Score=41.53 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=81.1
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHH
Q ss_conf 88865985787089995498751889999999998503981999986463047888875201577510000347889999
Q gi|254780334|r 80 DRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDII 159 (479)
Q Consensus 80 DrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il 159 (479)
T Consensus 139 a~~L~~~V~~r~nilI~G~TgsGKTTll~all~~i~~~~p~eRivtIED~~EL-~~~~~n----~v~~~~~~~vt~~~Ll 213 (320)
T PRK13894 139 REAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI-QCAAEN----YVQYHTSIDVNMTALL 213 (320)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHH-CCCCCC----EEEEECCCCCCHHHHH
T ss_conf 99999999728758998588865689999998632026952017752587880-787777----3576447886899999
Q ss_pred HHHHHCCCCCEEEECHHH-----HHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHH
Q ss_conf 999731698289972168-----7665420445563679-----999999999975307978999863036654331145
Q gi|254780334|r 160 ATLITNEKPDLVIIDSIQ-----TLWSQTAESSPGTVIQ-----VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRV 229 (479)
Q Consensus 160 ~~~i~~~~~~~vVIDSIQ-----tl~~~~~~s~~GsvsQ-----vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~ 229 (479)
T Consensus 214 ~~aL-R~rPDRIivGEvRg~Ea~~~l~A~nTGH~Gs~tTiHA~sa~~al~Rl~~l~~~~~~~---------~~~v--~~~ 281 (320)
T PRK13894 214 KTTL-RMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNAKAGLDRLAMLISMHPDS---------PKPI--EPL 281 (320)
T ss_pred HHHH-CCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCC---------HHHH--HHH
T ss_conf 9973-679985876654748999999999669987205346799999999999998636787---------8999--999
Q ss_pred HHHHHHEEEEEE
Q ss_conf 787753027851
Q gi|254780334|r 230 IEHMVDAVLYFE 241 (479)
Q Consensus 230 LeH~VD~vl~~e 241 (479)
T Consensus 282 ia~avdvVV~i~ 293 (320)
T PRK13894 282 IGEAVHVVVHIA 293 (320)
T ss_pred HHHHCCEEEEEE
T ss_conf 998689999998