HHsearch alignment for GI: 254780334 and conserved domain: TIGR00635

>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.25  E-value=0.00064  Score=48.16  Aligned_cols=24  Identities=38%  Similarity=0.623  Sum_probs=21.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf             999549875188999999999850
Q gi|254780334|r   93 ILVGGDPGIGKSTLLMQTAASLAY  116 (479)
Q Consensus        93 ~Li~G~PGvGKSTL~Lqia~~~a~  116 (479)
T Consensus        33 ~LL~GPPGLGKTTLA~IiA~Emg~   56 (305)
T TIGR00635        33 LLLYGPPGLGKTTLAHIIANEMGV   56 (305)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             663175687467899999998389