HHsearch alignment for GI: 254780334 and conserved domain: TIGR01243

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=96.85  E-value=0.023  Score=36.86  Aligned_cols=134  Identities=21%  Similarity=0.325  Sum_probs=84.6

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH
Q ss_conf             66632378124888865985787089995498751889999999998503981999986463047888875201577510
Q gi|254780334|r   68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV  147 (479)
Q Consensus        68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i  147 (479)
T Consensus       220 e~~elP~~hPe~f~~l--GiePPkG~ll~GPPGtGktllaka~ane~~---a~f~~inGPeims--------------ky  280 (980)
T TIGR01243       220 EMVELPLKHPELFEKL--GIEPPKGVLLYGPPGTGKTLLAKAVANEAG---AYFIAINGPEIMS--------------KY  280 (980)
T ss_pred             HHHHCCCCCHHHHHHC--CCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CEEEEECCCHHHH--------------HH
T ss_conf             9884357564789861--889987358755898617899999875305---5178850603443--------------31


Q ss_pred             HEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHHHHHCCCEEEEEEEECCCCCC
Q ss_conf             000347889999999731698289972168766542044556367999999--99999753079789998630366543
Q gi|254780334|r  148 YIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSV--QAMIQYAKKNGVAMVLVGHVTKEGQI  224 (479)
Q Consensus       148 ~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~--~~L~~~AK~~~i~vilighvTK~G~i  224 (479)
T Consensus       281 ~Ge~e~~lr~if~e-aeenaP~iifideidaia-Pkr~e~~Geve-~r~v~qlltlmdGlk~rG~v-~viGatnrP~a~  355 (980)
T TIGR01243       281 YGESEERLREIFKE-AEENAPSIIFIDEIDAIA-PKREEVTGEVE-KRVVAQLLTLMDGLKGRGKV-IVIGATNRPDAL  355 (980)
T ss_pred             CCCCHHHHHHHHHH-HHHCCCCEEEEECHHHCC-CCCCCHHHHHH-HHHHHHHHHHHHHHCCCCEE-EEEECCCCCCCC
T ss_conf             36307899999986-530587078741211007-64100001688-99999999997400248728-998146885002