HHsearch alignment for GI: 254780334 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=96.85 E-value=0.023 Score=36.86 Aligned_cols=134 Identities=21% Similarity=0.325 Sum_probs=84.6
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH
Q ss_conf 66632378124888865985787089995498751889999999998503981999986463047888875201577510
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV 147 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i 147 (479)
T Consensus 220 e~~elP~~hPe~f~~l--GiePPkG~ll~GPPGtGktllaka~ane~~---a~f~~inGPeims--------------ky 280 (980)
T TIGR01243 220 EMVELPLKHPELFEKL--GIEPPKGVLLYGPPGTGKTLLAKAVANEAG---AYFIAINGPEIMS--------------KY 280 (980)
T ss_pred HHHHCCCCCHHHHHHC--CCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CEEEEECCCHHHH--------------HH
T ss_conf 9884357564789861--889987358755898617899999875305---5178850603443--------------31
Q ss_pred HEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHHHHHCCCEEEEEEEECCCCCC
Q ss_conf 000347889999999731698289972168766542044556367999999--99999753079789998630366543
Q gi|254780334|r 148 YIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSV--QAMIQYAKKNGVAMVLVGHVTKEGQI 224 (479)
Q Consensus 148 ~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~--~~L~~~AK~~~i~vilighvTK~G~i 224 (479)
T Consensus 281 ~Ge~e~~lr~if~e-aeenaP~iifideidaia-Pkr~e~~Geve-~r~v~qlltlmdGlk~rG~v-~viGatnrP~a~ 355 (980)
T TIGR01243 281 YGESEERLREIFKE-AEENAPSIIFIDEIDAIA-PKREEVTGEVE-KRVVAQLLTLMDGLKGRGKV-IVIGATNRPDAL 355 (980)
T ss_pred CCCCHHHHHHHHHH-HHHCCCCEEEEECHHHCC-CCCCCHHHHHH-HHHHHHHHHHHHHHCCCCEE-EEEECCCCCCCC
T ss_conf 36307899999986-530587078741211007-64100001688-99999999997400248728-998146885002