HHsearch alignment for GI: 254780334 and conserved domain: TIGR01420

>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.97  E-value=0.0018  Score=44.83  Aligned_cols=99  Identities=21%  Similarity=0.300  Sum_probs=66.2

Q ss_pred             CCCCCCHHHHHHHCCCCC-C---------CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf             323781248888659857-8---------708999549875188999999999850398199998646304788887520
Q gi|254780334|r   71 RIQTHIDELDRVTGGGFV-R---------GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL  140 (479)
Q Consensus        71 Ri~TGi~eLDrvLGGGl~-~---------Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl  140 (479)
T Consensus       101 ~ip~~Ip~fe~L---GLP~~v~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~-~~HIiTIEDPIEyvh~-~~~s  175 (350)
T TIGR01420       101 LIPSKIPTFEEL---GLPRPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNK-AGHIITIEDPIEYVHK-NKRS  175 (350)
T ss_pred             HCCCCCCCHHHC---CCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCCCEEEECCEEEEEC-CCEE
T ss_conf             115346216663---7987899999836699389876889867899999997874038-8882563177314104-7702


Q ss_pred             CCCCCCHHEECCCCHHHHHHHHHHCCCCCEEEECHH
Q ss_conf             157751000034788999999973169828997216
Q gi|254780334|r  141 NTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSI  176 (479)
Q Consensus       141 ~~~~~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSI  176 (479)
T Consensus       176 li~QREv-G~DT~sF~~ALraALRe-DPDvILiGE~  209 (350)
T TIGR01420       176 LINQREV-GLDTLSFANALRAALRE-DPDVILIGEM  209 (350)
T ss_pred             EEECCCC-CCCHHHHHHHHHHHHCC-CCCEEEEECC
T ss_conf             4543624-67545799997684102-8988998255