HHsearch alignment for GI: 254780334 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.21 E-value=0.0041 Score=42.26 Aligned_cols=147 Identities=23% Similarity=0.389 Sum_probs=82.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH--HHCCCC-----------CCCHHEECC
Q ss_conf 8578708999549875188999999999850398199998646304788887--520157-----------751000034
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRA--QRLNTI-----------NSSVYIAIE 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra--~Rl~~~-----------~~~i~~~~e 152 (479)
T Consensus 352 ~~~aGe~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGad--l~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~e 429 (556)
T TIGR01842 352 AIQAGEALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGAD--LKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGE 429 (556)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHH--HHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 563774588874786525889878872101356533640334--402375365880154798505076767640244688
Q ss_pred -CCHHHHHHH-------------------------------------H--HHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf -788999999-------------------------------------9--731698289972168766542044556367
Q gi|254780334|r 153 -TNVEDIIAT-------------------------------------L--ITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 153 -~~l~~il~~-------------------------------------~--i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
T Consensus 430 n~d~~~iieAAklAGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAlyG~P~lvvLDEP----NsNLD~~-GE~- 503 (556)
T TIGR01842 430 NADPEKIIEAAKLAGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALYGDPKLVVLDEP----NSNLDEE-GEQ- 503 (556)
T ss_pred CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC----CCCCCHH-HHH-
T ss_conf 7887899999976030357516968854431377777861468999999987179837873288----9876617-899-
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE-CCCCCCCCCCEEEEEEEECCCCCCCE
Q ss_conf 9999999999975307978999863036654331145787753027851-55566654421567632025676512
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE-GGTRNTQYDYRILRSVKNRFGPTDEI 267 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e-ge~~~~~~~~R~Lr~~KNRfG~t~e~ 267 (479)
T Consensus 504 ---AL~~Ai-~~lK~rg~tvv~itH--------Rp~-lL~~vDkIl~l~dG---------~~-----~~fG~r~~v 552 (556)
T TIGR01842 504 ---ALANAI-KALKARGITVVVITH--------RPS-LLGLVDKILVLQDG---------RL-----KAFGERDEV 552 (556)
T ss_pred ---HHHHHH-HHHHHCCCEEEEEEC--------HHH-HHHHHHHHHHHHCC---------HH-----HHCCCHHHH
T ss_conf ---999999-999867972899841--------068-99999999998407---------16-----303881279