HHsearch alignment for GI: 254780334 and conserved domain: TIGR02142

>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=97.56  E-value=0.0004  Score=49.61  Aligned_cols=192  Identities=20%  Similarity=0.256  Sum_probs=102.3

Q ss_pred             CCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC---CCHHHHHHHHH--HCC-------------CCCCCHH
Q ss_conf             787-0899954987518899999999985039819999864---63047888875--201-------------5775100
Q gi|254780334|r   88 VRG-SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE---EAIGQIRLRAQ--RLN-------------TINSSVY  148 (479)
Q Consensus        88 ~~G-s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E---Es~~Qi~~Ra~--Rl~-------------~~~~~i~  148 (479)
T Consensus        20 ~pg~GvtAlFG~SGsGKTtli~~ia-GL~rp~~G~i~l~G~~L~ds~k~i~Lp~ekRr~GYVFQeA~LFPHl~Vr~NL~Y   98 (361)
T TIGR02142        20 LPGQGVTALFGRSGSGKTTLIRLIA-GLTRPDEGEIVLNGEVLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRY   98 (361)
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHH-HCCCCCCCEEEECCEEEECCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHC
T ss_conf             2874068712589970789999987-316756687998874620567766787201135368853550785233455125


Q ss_pred             EEC-----C--CCHHHHHHH-----HHH--------------------CCCCCEEEEC-HHHHHHHHHHCCCCCCHHHHH
Q ss_conf             003-----4--788999999-----973--------------------1698289972-168766542044556367999
Q gi|254780334|r  149 IAI-----E--TNVEDIIAT-----LIT--------------------NEKPDLVIID-SIQTLWSQTAESSPGTVIQVR  195 (479)
Q Consensus       149 ~~~-----e--~~l~~il~~-----~i~--------------------~~~~~~vVID-SIQtl~~~~~~s~~GsvsQvr  195 (479)
T Consensus        99 G~~~~~~~~r~i~~~~v~~lLgi~hLL~R~p~~LSGGEkQRVAIGRALLs~P~LLLMDEPLaaL-----D~-----~rk~  168 (361)
T TIGR02142        99 GMKRARPKERRISFERVIELLGIEHLLERLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL-----DE-----PRKK  168 (361)
T ss_pred             CCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCHHHC-----CH-----HHHH
T ss_conf             7210574121378899998746751121678875784047788998874187411104662340-----64-----4466


Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE-CCCCC--------CCCCCEEEEEEEECCCCCCC
Q ss_conf             9999999975307978999863036654331145787753027851-55566--------65442156763202567651
Q gi|254780334|r  196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE-GGTRN--------TQYDYRILRSVKNRFGPTDE  266 (479)
Q Consensus       196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e-ge~~~--------~~~~~R~Lr~~KNRfG~t~e  266 (479)
T Consensus       169 EilPYLerL~~e~~iP~lyVSHs--------l~Ev~rLADrvvvl~~GrV~a~G~~~~v~~~~~l~p~-~~~~~~g~~~~  239 (361)
T TIGR02142       169 EILPYLERLHAELKIPILYVSHS--------LDEVARLADRVVVLEDGRVEAAGPLEEVWSSPDLPPW-LEREEAGSVLE  239 (361)
T ss_pred             HHCCHHHHHHHHHCCCEEEEECC--------HHHHHHHHCEEEEEECCEECCCCCHHHHHCCCCCCCC-CCCCCCCEEEE
T ss_conf             41616767898727988999049--------7999876074787435701036867999536577723-25786633656


Q ss_pred             EEEEEECC-CCCEEECCH-HHHHHCCCCCCCCCEE
Q ss_conf             27998515-663110140-4555114766767348
Q gi|254780334|r  267 IGVFEMSD-KGLQEVSDP-SKIFLSDRDSTSPGTA  299 (479)
Q Consensus       267 ~gvf~m~~-~Gl~~v~~p-s~~fl~~~~~~~~Gs~  299 (479)
T Consensus       240 ~~v~~~~~~ygL~~l~l~e~~~l~V~~~~~~~G~~  274 (361)
T TIGR02142       240 GVVAEHDQHYGLTALRLGEDGHLWVPEKKGPVGAR  274 (361)
T ss_pred             EEEECCCCCCCCEECCCCCCCEEEEECCCCCCCCC
T ss_conf             54110386532012015888389972676765852