>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.

Probab=97.71  E-value=0.00058  Score=48.46  Aligned_cols=127  Identities=21%  Similarity=0.384  Sum_probs=78.3

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-----CHHHHHHHHHHCCCCCCCHHEECC-CCHHH--
Q ss_conf             8578708999549875188999999999850398199998646-----304788887520157751000034-78899--
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-----AIGQIRLRAQRLNTINSSVYIAIE-TNVED--  157 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-----s~~Qi~~Ra~Rl~~~~~~i~~~~e-~~l~~--  157 (479)
T Consensus        27 ~i~~GE~~~IvG~SGSGKSTLL-HlLGGLD~PT~G~v~f~G~~l~~lS~~~~~~LRN~~LGFiYQFHHLL~dFtaLENVa  105 (221)
T TIGR02211        27 SIGKGEIVAIVGSSGSGKSTLL-HLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA  105 (221)
T ss_pred             EEECCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHCCCEEEHHHCCCCCCHHHHHH
T ss_conf             2306633798736787168999-987306899631589706323440446788751222584443202030000268877


Q ss_pred             ----------------------------------------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf             ----------------------------------------------9999973169828997216876654204455636
Q gi|254780334|r  158 ----------------------------------------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTV  191 (479)
Q Consensus       158 ----------------------------------------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv  191 (479)
T Consensus       106 MP~LIg~~s~~ea~~~A~~mL~~VgL~~R~~h~PSELSGGERQRvAIARALv--N~P~lvlADEP----TGNLD~~----  175 (221)
T TIGR02211       106 MPLLIGKKSKKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV--NQPSLVLADEP----TGNLDNN----  175 (221)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEECCCC----CCHHHHH----
T ss_conf             7775358998899999999988607334455577734563379999999861--89765861298----8532377----


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCH
Q ss_conf             799999999999753079789998630366543311
Q gi|254780334|r  192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGP  227 (479)
Q Consensus       192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp  227 (479)
T Consensus       176 -~a~~iF~L~~eLN~~~~TsflvVTH---D~~LA~k  207 (221)
T TIGR02211       176 -NAKSIFELMLELNRELNTSFLVVTH---DLELAKK  207 (221)
T ss_pred             -HHHHHHHHHHHHHHHCCCEEEEEEC---CHHHHHC
T ss_conf             -7999999999988653916999834---7578730