HHsearch alignment for GI: 254780334 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.89 E-value=3e-21 Score=174.61 Aligned_cols=197 Identities=23% Similarity=0.397 Sum_probs=157.3
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CHHHHHHHHHHC----CCCCCCHHEECC
Q ss_conf 88886598578708999549875188999999999850398199998646--304788887520----157751000034
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE--AIGQIRLRAQRL----NTINSSVYIAIE 152 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE--s~~Qi~~Ra~Rl----~~~~~~i~~~~e 152 (479)
T Consensus 1 iD~LLgGGvE~G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~ 80 (223)
T TIGR02237 1 IDELLGGGVERGIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFEV 80 (223)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEECC
T ss_conf 95220585120358898758998678999999999986189589996289832899999863058898888415355235
Q ss_pred CCHHHH------HHHHHHCC--CCCEEEECHHHHHHHHHHCCCC-CCHHHHHHHHH---HHHHHHHHCCCEEEEEEEECC
Q ss_conf 788999------99997316--9828997216876654204455-63679999999---999975307978999863036
Q gi|254780334|r 153 TNVEDI------IATLITNE--KPDLVIIDSIQTLWSQTAESSP-GTVIQVRTSVQ---AMIQYAKKNGVAMVLVGHVTK 220 (479)
Q Consensus 153 ~~l~~i------l~~~i~~~--~~~~vVIDSIQtl~~~~~~s~~-GsvsQvre~~~---~L~~~AK~~~i~vilighvTK 220 (479)
T Consensus 81 ~~f~eQ~~ai~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~~d~nk~~~~~~~l~~Ql~~Ll~lArk~~~AVviTNQvy~ 160 (223)
T TIGR02237 81 FDFDEQEVAIQKTSKLIDRDGDKADLVVVDSFTALYRLERSDDRNKQISLNRELARQLTLLLSLARKKDLAVVITNQVYT 160 (223)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 35678999999999998606883314888153345420257860256799999999999999998764997899711588
Q ss_pred C---C--CCC---CHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCE
Q ss_conf 6---5--433---11457877530278515556665442156763202567651279985156631
Q gi|254780334|r 221 E---G--QIA---GPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQ 278 (479)
Q Consensus 221 ~---G--~iA---Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~ 278 (479)
T Consensus 161 d~~~gG~~~~~P~GG~~L~h~~K~i~rLE~---~~r~G~R~a~L~kHR~~~EG~~v~FrItd~GI~ 223 (223)
T TIGR02237 161 DVNNGGSETLRPLGGHLLEHWSKVILRLEK---LNRVGRRKATLEKHRSRKEGESVKFRITDDGIE 223 (223)
T ss_pred EECCCCCCEEEECCCHHHHHHHCEEEEEEC---CCCCCCEEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf 637797320100331134311021335644---789874245665405578997578998227879