HHsearch alignment for GI: 254780334 and conserved domain: TIGR02238
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940 This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=99.54 E-value=2.4e-14 Score=124.21 Aligned_cols=207 Identities=22% Similarity=0.324 Sum_probs=150.2
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH------HCCCCCEEEEECCCC--HHHHHHHH
Q ss_conf 5566632378124888865985787089995498751889999999998------503981999986463--04788887
Q gi|254780334|r 66 IEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASL------AYKKHRITYVSGEEA--IGQIRLRA 137 (479)
Q Consensus 66 ~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~------a~~g~~vlYvS~EEs--~~Qi~~Ra 137 (479)
T Consensus 72 R~~V~~i~TGs~~~d~~LGGGi~s~~ITE~fGEfR~GKTQl~HTL~VtaQLP~~~~g~~GKv~yIDTEgTFRPdri~~IA 151 (314)
T TIGR02238 72 RKKVLKISTGSKALDKILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGEGKVAYIDTEGTFRPDRIKAIA 151 (314)
T ss_pred CCEEEEEECCHHHHHHHCCCCEEEEEHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 62467762315887434078700000000004556771465556655320631257998428998178885817899887
Q ss_pred HHCCCCCC----CHHEECCCCHHHH-------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH---H-HHHHHHHHH
Q ss_conf 52015775----1000034788999-------9999731698289972168766542044556367---9-999999999
Q gi|254780334|r 138 QRLNTINS----SVYIAIETNVEDI-------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI---Q-VRTSVQAMI 202 (479)
Q Consensus 138 ~Rl~~~~~----~i~~~~e~~l~~i-------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs---Q-vre~~~~L~ 202 (479)
T Consensus 152 erf~~D~~~~L~Ni~yaRA~~~Eh~~~l~~~~~~~~~e~~~f~llivDSI~alFRVDfsGR-GELseRQQKL~~~l~~L~ 230 (314)
T TIGR02238 152 ERFGVDGEAVLDNILYARAYTSEHQMELLEKLAAKFAEEGDFRLLIVDSIMALFRVDFSGR-GELSERQQKLAQMLSRLN 230 (314)
T ss_pred HHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf 5407898899988898875042789999999988752268716886420255413121257-640278899999999987
Q ss_pred HHHHHCCCEEEEEEEECCC-CC----CC------CHHHHHHHHHEEEEEE-CCCCCCCCCCEEEEEEEECCCCCCCEEEE
Q ss_conf 9753079789998630366-54----33------1145787753027851-55566654421567632025676512799
Q gi|254780334|r 203 QYAKKNGVAMVLVGHVTKE-GQ----IA------GPRVIEHMVDAVLYFE-GGTRNTQYDYRILRSVKNRFGPTDEIGVF 270 (479)
Q Consensus 203 ~~AK~~~i~vilighvTK~-G~----iA------Gp~~LeH~VD~vl~~e-ge~~~~~~~~R~Lr~~KNRfG~t~e~gvf 270 (479)
T Consensus 231 ~~sEefNvAv~~TNQv~~DPGa~~~F~~~~~KP~GGHvlaHAs~~R~~lRKGr-----g~~RvaK~~DsP~~pE~E~-~f 304 (314)
T TIGR02238 231 KLSEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHASATRLLLRKGR-----GDERVAKLYDSPDLPEAEA-SF 304 (314)
T ss_pred HHHHHHHHHHEEECCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCEEEECCCCCCCCCCC-EE
T ss_conf 65466402320011220088730000007888715025777899888641588-----6551673016887722141-46
Q ss_pred EECCCCCEE
Q ss_conf 851566311
Q gi|254780334|r 271 EMSDKGLQE 279 (479)
Q Consensus 271 ~m~~~Gl~~ 279 (479)
T Consensus 305 ~i~~~G~~D 313 (314)
T TIGR02238 305 QITEGGIAD 313 (314)
T ss_pred EECCCCCCC
T ss_conf 764876435