HHsearch alignment for GI: 254780334 and conserved domain: TIGR02238

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940 This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=99.54  E-value=2.4e-14  Score=124.21  Aligned_cols=207  Identities=22%  Similarity=0.324  Sum_probs=150.2

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH------HCCCCCEEEEECCCC--HHHHHHHH
Q ss_conf             5566632378124888865985787089995498751889999999998------503981999986463--04788887
Q gi|254780334|r   66 IEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASL------AYKKHRITYVSGEEA--IGQIRLRA  137 (479)
Q Consensus        66 ~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~------a~~g~~vlYvS~EEs--~~Qi~~Ra  137 (479)
T Consensus        72 R~~V~~i~TGs~~~d~~LGGGi~s~~ITE~fGEfR~GKTQl~HTL~VtaQLP~~~~g~~GKv~yIDTEgTFRPdri~~IA  151 (314)
T TIGR02238        72 RKKVLKISTGSKALDKILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGEGKVAYIDTEGTFRPDRIKAIA  151 (314)
T ss_pred             CCEEEEEECCHHHHHHHCCCCEEEEEHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf             62467762315887434078700000000004556771465556655320631257998428998178885817899887


Q ss_pred             HHCCCCCC----CHHEECCCCHHHH-------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH---H-HHHHHHHHH
Q ss_conf             52015775----1000034788999-------9999731698289972168766542044556367---9-999999999
Q gi|254780334|r  138 QRLNTINS----SVYIAIETNVEDI-------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI---Q-VRTSVQAMI  202 (479)
Q Consensus       138 ~Rl~~~~~----~i~~~~e~~l~~i-------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs---Q-vre~~~~L~  202 (479)
T Consensus       152 erf~~D~~~~L~Ni~yaRA~~~Eh~~~l~~~~~~~~~e~~~f~llivDSI~alFRVDfsGR-GELseRQQKL~~~l~~L~  230 (314)
T TIGR02238       152 ERFGVDGEAVLDNILYARAYTSEHQMELLEKLAAKFAEEGDFRLLIVDSIMALFRVDFSGR-GELSERQQKLAQMLSRLN  230 (314)
T ss_pred             HHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf             5407898899988898875042789999999988752268716886420255413121257-640278899999999987


Q ss_pred             HHHHHCCCEEEEEEEECCC-CC----CC------CHHHHHHHHHEEEEEE-CCCCCCCCCCEEEEEEEECCCCCCCEEEE
Q ss_conf             9753079789998630366-54----33------1145787753027851-55566654421567632025676512799
Q gi|254780334|r  203 QYAKKNGVAMVLVGHVTKE-GQ----IA------GPRVIEHMVDAVLYFE-GGTRNTQYDYRILRSVKNRFGPTDEIGVF  270 (479)
Q Consensus       203 ~~AK~~~i~vilighvTK~-G~----iA------Gp~~LeH~VD~vl~~e-ge~~~~~~~~R~Lr~~KNRfG~t~e~gvf  270 (479)
T Consensus       231 ~~sEefNvAv~~TNQv~~DPGa~~~F~~~~~KP~GGHvlaHAs~~R~~lRKGr-----g~~RvaK~~DsP~~pE~E~-~f  304 (314)
T TIGR02238       231 KLSEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHASATRLLLRKGR-----GDERVAKLYDSPDLPEAEA-SF  304 (314)
T ss_pred             HHHHHHHHHHEEECCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCEEEECCCCCCCCCCC-EE
T ss_conf             65466402320011220088730000007888715025777899888641588-----6551673016887722141-46


Q ss_pred             EECCCCCEE
Q ss_conf             851566311
Q gi|254780334|r  271 EMSDKGLQE  279 (479)
Q Consensus       271 ~m~~~Gl~~  279 (479)
T Consensus       305 ~i~~~G~~D  313 (314)
T TIGR02238       305 QITEGGIAD  313 (314)
T ss_pred             EECCCCCCC
T ss_conf             764876435