HHsearch alignment for GI: 254780334 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=97.34 E-value=0.0011 Score=46.29 Aligned_cols=67 Identities=24% Similarity=0.243 Sum_probs=46.2
Q ss_pred CCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 564031333455666323781248888659857870899954987518899999999985039819999864
Q gi|254780334|r 56 ISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 56 ~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
T Consensus 123 ~pP~P~~R~~I~--~PL~tGvRaiDGlLT--cG~GQRiGIFA~aG~GKSTLL~~i~~g~-~ADv~V~ALIGE 189 (430)
T TIGR02546 123 DPPPPMSRQPID--QPLPTGVRAIDGLLT--CGEGQRIGIFAGAGVGKSTLLGMIARGA-SADVNVIALIGE 189 (430)
T ss_pred CCCCCCCCCCCC--CCCHHHHHHHHHHHH--CCCCCEEEEEECCCCCHHHHHHHHHCCC-CCCEEEEEECCC
T ss_conf 810487675334--651014667543440--3665305787088861668999986189-887899860278