HHsearch alignment for GI: 254780334 and conserved domain: TIGR02858

>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=97.14  E-value=0.0028  Score=43.42  Aligned_cols=139  Identities=22%  Similarity=0.234  Sum_probs=80.5

Q ss_pred             CCEECCCCCCCCC--CCCCCCC--HHHHHHH-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-------CCCCEEEE
Q ss_conf             6403133345566--6323781--2488886-598578708999549875188999999999850-------39819999
Q gi|254780334|r   57 SLFMLSEESIEEE--SRIQTHI--DELDRVT-GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY-------KKHRITYV  124 (479)
Q Consensus        57 ~~~~l~~~~~~~~--~Ri~TGi--~eLDrvL-GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-------~g~~vlYv  124 (479)
T Consensus        87 ~vk~ik~v~S~NiRIaRE~~G~A~~~~~yL~d~~~~~--~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgiv  164 (282)
T TIGR02858        87 KVKTIKNVASLNIRIAREVLGAADKILPYLVDRNGRV--LNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIV  164 (282)
T ss_pred             CEEEEECCCCCCEEEEEECCCCCHHHHHHHHCCCCCE--EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf             4645105464213302000577566688773058944--67888868898851048889888607854246899746998


Q ss_pred             ECCCCHHHHHHHHHHCCCCCCCHH----EECC-CCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             864630478888752015775100----0034-78899999997316982899721687665420445563679999999
Q gi|254780334|r  125 SGEEAIGQIRLRAQRLNTINSSVY----IAIE-TNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQ  199 (479)
Q Consensus       125 S~EEs~~Qi~~Ra~Rl~~~~~~i~----~~~e-~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~  199 (479)
T Consensus       165 D-ERSE--IAg--C~~GvPQ~~vG~RtDVLD~CPKAEGmM-M~iRSMSP~Viv~DEIGr~---------ED-------~~  222 (282)
T TIGR02858       165 D-ERSE--IAG--CVNGVPQLDVGIRTDVLDGCPKAEGMM-MLIRSMSPDVIVVDEIGRE---------ED-------VE  222 (282)
T ss_pred             E-CCHH--HHH--HCCCCCCCCCCCCEEECCCCCHHHHHH-HHHHCCCCCEEEEECCCCH---------HH-------HH
T ss_conf             4-3246--565--458824144676067517885378999-9997069857998148895---------33-------89


Q ss_pred             HHHHHHHHCCCEEEEEEEECC
Q ss_conf             999975307978999863036
Q gi|254780334|r  200 AMIQYAKKNGVAMVLVGHVTK  220 (479)
Q Consensus       200 ~L~~~AK~~~i~vilighvTK  220 (479)
T Consensus       223 Al~-eA~naGV~~I~TaHg~~  242 (282)
T TIGR02858       223 ALL-EALNAGVSVIATAHGRD  242 (282)
T ss_pred             HHH-HHHCCCCEEEEEECCCC
T ss_conf             999-98616756887640488