HHsearch alignment for GI: 254780334 and conserved domain: TIGR02858
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=97.14 E-value=0.0028 Score=43.42 Aligned_cols=139 Identities=22% Similarity=0.234 Sum_probs=80.5
Q ss_pred CCEECCCCCCCCC--CCCCCCC--HHHHHHH-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-------CCCCEEEE
Q ss_conf 6403133345566--6323781--2488886-598578708999549875188999999999850-------39819999
Q gi|254780334|r 57 SLFMLSEESIEEE--SRIQTHI--DELDRVT-GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY-------KKHRITYV 124 (479)
Q Consensus 57 ~~~~l~~~~~~~~--~Ri~TGi--~eLDrvL-GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-------~g~~vlYv 124 (479)
T Consensus 87 ~vk~ik~v~S~NiRIaRE~~G~A~~~~~yL~d~~~~~--~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgiv 164 (282)
T TIGR02858 87 KVKTIKNVASLNIRIAREVLGAADKILPYLVDRNGRV--LNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIV 164 (282)
T ss_pred CEEEEECCCCCCEEEEEECCCCCHHHHHHHHCCCCCE--EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 4645105464213302000577566688773058944--67888868898851048889888607854246899746998
Q ss_pred ECCCCHHHHHHHHHHCCCCCCCHH----EECC-CCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 864630478888752015775100----0034-78899999997316982899721687665420445563679999999
Q gi|254780334|r 125 SGEEAIGQIRLRAQRLNTINSSVY----IAIE-TNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQ 199 (479)
Q Consensus 125 S~EEs~~Qi~~Ra~Rl~~~~~~i~----~~~e-~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~ 199 (479)
T Consensus 165 D-ERSE--IAg--C~~GvPQ~~vG~RtDVLD~CPKAEGmM-M~iRSMSP~Viv~DEIGr~---------ED-------~~ 222 (282)
T TIGR02858 165 D-ERSE--IAG--CVNGVPQLDVGIRTDVLDGCPKAEGMM-MLIRSMSPDVIVVDEIGRE---------ED-------VE 222 (282)
T ss_pred E-CCHH--HHH--HCCCCCCCCCCCCEEECCCCCHHHHHH-HHHHCCCCCEEEEECCCCH---------HH-------HH
T ss_conf 4-3246--565--458824144676067517885378999-9997069857998148895---------33-------89
Q ss_pred HHHHHHHHCCCEEEEEEEECC
Q ss_conf 999975307978999863036
Q gi|254780334|r 200 AMIQYAKKNGVAMVLVGHVTK 220 (479)
Q Consensus 200 ~L~~~AK~~~i~vilighvTK 220 (479)
T Consensus 223 Al~-eA~naGV~~I~TaHg~~ 242 (282)
T TIGR02858 223 ALL-EALNAGVSVIATAHGRD 242 (282)
T ss_pred HHH-HHHCCCCEEEEEECCCC
T ss_conf 999-98616756887640488