HHsearch alignment for GI: 254780334 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.96 E-value=5.3e-29 Score=231.12 Aligned_cols=372 Identities=21% Similarity=0.282 Sum_probs=235.6
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH---HHHHHHHHCC--CCCEEEEECCC
Q ss_conf 665640313334556663237812488886598578708999549875188999---9999998503--98199998646
Q gi|254780334|r 54 HSISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLL---MQTAASLAYK--KHRITYVSGEE 128 (479)
Q Consensus 54 ~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~---Lqia~~~a~~--g~~vlYvS~EE 128 (479)
T Consensus 57 Ek~RP~SF~EIiGQe-----~GI~ALKAALC-GPNP-QHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDA 129 (532)
T TIGR02902 57 EKTRPKSFDEIIGQE-----EGIKALKAALC-GPNP-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDA 129 (532)
T ss_pred CCCCCCCCCCCCCCH-----HHHHHHHHHCC-CCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf 466777633256735-----56899998606-8689-6389878869617899999999865087537898866898505
Q ss_pred CHHHHHHH--HH-HCCCCCCCHH---------------------------E------ECCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 30478888--75-2015775100---------------------------0------03478899999997316982899
Q gi|254780334|r 129 AIGQIRLR--AQ-RLNTINSSVY---------------------------I------AIETNVEDIIATLITNEKPDLVI 172 (479)
Q Consensus 129 s~~Qi~~R--a~-Rl~~~~~~i~---------------------------~------~~e~~l~~il~~~i~~~~~~~vV 172 (479)
T Consensus 130 TT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLLK-VLED---RKVF 205 (532)
T TIGR02902 130 TTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLK-VLED---RKVF 205 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH-HHHC---CCCH
T ss_conf 10360214666656776158533376545788557587776320258655121246658243531411-3302---2200
Q ss_pred ECHHHHHHHHHHCCCCCCHHHHHHHHH---------------------------------------HHHHHHHHCCCEEE
Q ss_conf 721687665420445563679999999---------------------------------------99997530797899
Q gi|254780334|r 173 IDSIQTLWSQTAESSPGTVIQVRTSVQ---------------------------------------AMIQYAKKNGVAMV 213 (479)
Q Consensus 173 IDSIQtl~~~~~~s~~GsvsQvre~~~---------------------------------------~L~~~AK~~~i~vi 213 (479)
T Consensus 206 LdS--AYY~s~~pniP---~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~iAk~A----- 275 (532)
T TIGR02902 206 LDS--AYYSSEDPNIP---SHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEIAKNA----- 275 (532)
T ss_pred HHC--CCCCCCCCCCC---HHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHH-----
T ss_conf 001--23587778654---27899720678734012133369877678346505226771688878999998765-----
Q ss_pred EEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCC--CCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCCC
Q ss_conf 9863036654331145787753027851555666--54421567632025676512799851566311014045551147
Q gi|254780334|r 214 LVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNT--QYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDR 291 (479)
Q Consensus 214 lighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~--~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~ 291 (479)
T Consensus 276 ----aeKIg~~l~~~Al~~I~~Ya--~nGREAvN~~QLAaG~a-~~E~Rk~I~~~DieWV~~~G~y~P---k~~~k~~-- 343 (532)
T TIGR02902 276 ----AEKIGLNLEKEALDLIAKYA--SNGREAVNLVQLAAGIA-LGENRKRILAEDIEWVIESGNYHP---KPEIKLS-- 343 (532)
T ss_pred ----HHHCCCCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHE-ECCCCCEECHHHHHHHHHHCCCCC---CCCEEEC--
T ss_conf ----65304654754799999874--05406778999973140-128876120546445553047877---4340207--
Q ss_pred CCCCCCEEEEEEECCCC-CCEEEEEEEECCCCCCC-CEEEEECCC------------------HHHHHHHHHHHHHHCCC
Q ss_conf 66767348997304897-41155331011577877-247760468------------------66655558988751111
Q gi|254780334|r 292 DSTSPGTAVFAGIEGTR-ALLVEIQSLVVPTSLGM-PRRTVVGWD------------------SSRLAMILAVLEARCNI 351 (479)
Q Consensus 292 ~~~~~Gs~v~~~~eG~r-~~lvEvQALv~~~~~~~-p~R~~~G~d------------------~~rl~~llAvl~k~~~~ 351 (479)
T Consensus 344 ~~P~iG~VNGLaV~Gpn~G~vl~~E~~a~~a~~~~qG~i~vtGIiEEE~~gg~~~~~~rKS~a~gSvENV~~Vl~~~~~i 423 (532)
T TIGR02902 344 SEPQIGLVNGLAVYGPNSGAVLEVEVTAERAENKRQGSINVTGIIEEEEIGGSGKSVRRKSSAKGSVENVLAVLKSVFNI 423 (532)
T ss_pred CCCCEEEEECCEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88853566554460677551302343776601148842899888710001798961520022443088999999988478
Q ss_pred CCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECH
Q ss_conf 02462221001456111543258799999999724886887859998742473163407889999999976998999775
Q gi|254780334|r 352 KFGNHDVHLNIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPE 431 (479)
Q Consensus 352 ~~~~~Di~~nv~gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~ 431 (479)
T Consensus 424 ~p~~YDIHiNFpGG~PvDGPSAG~aiA~aiySA~~~~PIdn~vAmTGEISL~G~VKPVGGV~~Ki~AA~~AGak~ViIP~ 503 (532)
T TIGR02902 424 NPKDYDIHINFPGGIPVDGPSAGVAIAVAIYSAIKKVPIDNKVAMTGEISLNGLVKPVGGVVSKIEAAKKAGAKKVIIPY 503 (532)
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHCCCCEEECCC
T ss_conf 82126478854878842260089999999999871788877211133386401052017861268999974972653475
Q ss_pred HHHHHCC--CCCEEEEEECCHHHHHHHHH
Q ss_conf 7653228--58808998383999999861
Q gi|254780334|r 432 SAKGECK--IGMLDRQYIKNLSDLVKKIT 458 (479)
Q Consensus 432 ~n~~e~~--~~~i~i~~v~~l~e~i~~l~ 458 (479)
T Consensus 504 eNwqe~~~~~~~I~vipVk~~~E~l~~~l 532 (532)
T TIGR02902 504 ENWQESFESISGIKVIPVKNIDEVLEVAL 532 (532)
T ss_pred CHHHHHHHHHCCEEEEECCCHHHHHHHHC
T ss_conf 20789998552715863263899998839