HHsearch alignment for GI: 254780334 and conserved domain: TIGR03269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.72 E-value=0.0015 Score=45.47 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=30.7
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 16982899721687665420445563679999999999975307978999863
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
T Consensus 184 ~~~P~lLilDEPTa~----LD-----~~~~~~l~~~l~~l~~~~g~tii~isH 227 (520)
T TIGR03269 184 AKEPFLFLADEPTGT----LD-----PQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred HCCCCEEEEECCCCC----CC-----HHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 459989997076335----79-----999999999999999983965999748