HHsearch alignment for GI: 254780334 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.49 E-value=0.00085 Score=47.25 Aligned_cols=88 Identities=20% Similarity=0.162 Sum_probs=41.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHEECC-CCCCCCCCCCCHHHH------HHHHHHHCCCCCCCCEEEEE
Q ss_conf 24776046866655558988751111024622210014-561115432587999------99999724886887859998
Q gi|254780334|r 326 PRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIA-GGYRISEPAADVAVA------AALISSILSIPLPSDFVYFG 398 (479)
Q Consensus 326 p~R~~~G~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~-gG~~i~~pa~DLaia------~ailSs~~~~~~~~~~~~~G 398 (479)
T Consensus 520 G~i~idg~~~~~~~--~~~~r~~i~~v~Q~~~lf~gTi~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~lp~g~~t~-i~ 596 (694)
T TIGR03375 520 GSVLLDGVDIRQID--PADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQ-IG 596 (694)
T ss_pred CEEEECCEECCCCC--HHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCE-EC
T ss_conf 87998985425499--9999730213576771107469999841699999999999999819799997185667877-46
Q ss_pred EE--ECCCEEEEECCHHHHHHHHHHC
Q ss_conf 74--2473163407889999999976
Q gi|254780334|r 399 EV--SLSGSVRAVGHMQQRLKEAEKI 422 (479)
Q Consensus 399 El--~L~GeIR~V~~i~~ri~eA~~~ 422 (479)
T Consensus 597 e~G~~LSg------GqrQri~lARAl 616 (694)
T TIGR03375 597 ERGRSLSG------GQRQAVALARAL 616 (694)
T ss_pred CCCCCCCH------HHHHHHHHHHHH
T ss_conf 89994689------999999999999