HHsearch alignment for GI: 254780334 and conserved domain: TIGR03415
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.61 E-value=0.00052 Score=48.80 Aligned_cols=122 Identities=17% Similarity=0.277 Sum_probs=64.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-------CHHH-HHHHHHHCCCCCCCHHEECCCC-HH
Q ss_conf 8578708999549875188999999999850398199998646-------3047-8888752015775100003478-89
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-------AIGQ-IRLRAQRLNTINSSVYIAIETN-VE 156 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-------s~~Q-i~~Ra~Rl~~~~~~i~~~~e~~-l~ 156 (479)
T Consensus 46 ~I~~GEi~~lvGpSGsGKSTLLr~i~GL~~pt~G~I~i~~~~~~~d~~~~~~~~lr~~R~~~IgmVFQ~~aL~P~~TV~e 125 (382)
T TIGR03415 46 DIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE 125 (382)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHH
T ss_conf 88799899999999734999999997599988529999268642245659989987630576699963786465681999
Q ss_pred HH-----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf 99-----------------------------------------------9999731698289972168766542044556
Q gi|254780334|r 157 DI-----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 157 ~i-----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
T Consensus 126 Nia~~L~~~g~~~~e~~~rv~e~L~~VgL~~~~~~yP~eLSGGqqQRVaIARAL-a~~P~iLLmDEPfs----aLD---- 196 (382)
T TIGR03415 126 NVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF-AMDADILLMDEPFS----ALD---- 196 (382)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCCC----CCC----
T ss_conf 998999886999999999999998735984655479555798899999999998-63899899708876----559----
Q ss_pred CHHHHH-HHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 367999-99999999753079789998630
Q gi|254780334|r 190 TVIQVR-TSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 190 svsQvr-e~~~~L~~~AK~~~i~vilighv 218 (479)
T Consensus 197 --~~~r~~l~~~l~~L~~~~~~TiifVTHD 224 (382)
T TIGR03415 197 --PLIRTQLQDELLELQAKLNKTIIFVSHD 224 (382)
T ss_pred --HHHHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf --9999999999999999869989998799