HHsearch alignment for GI: 254780334 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.76 E-value=0.00034 Score=50.14 Aligned_cols=95 Identities=20% Similarity=0.361 Sum_probs=64.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCC
Q ss_conf 70899954987518899999999985039819999864630478888752015775100003478899999997316982
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPD 169 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~ 169 (479)
T Consensus 38 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~----------------------~~l~~---l~~~d 92 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADP----------------------EVLEG---LEQAD 92 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH----------------------HHHHH---CCCCC
T ss_conf 886999899999889999999999862699579952999877539----------------------99972---74489
Q ss_pred EEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 8997216876654204455636799999999999753079789998630
Q gi|254780334|r 170 LVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 170 ~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighv 218 (479)
T Consensus 93 ~l~iDDi~~i~~~-----~----~~e~~lF~l~N~~~~~~~~ilits~~ 132 (226)
T TIGR03420 93 LVCLDDVEAIAGQ-----P----EWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred EEEEECHHHHCCC-----H----HHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 9999663334378-----3----78999999999998652828986788