HHsearch alignment for GI: 254780334 and conserved domain: TIGR03499

>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.12  E-value=3.5e-05  Score=57.39  Aligned_cols=82  Identities=24%  Similarity=0.414  Sum_probs=61.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHH
Q ss_conf             87089995498751889999999998503--98199998646----3047888875201577510000347889999999
Q gi|254780334|r   89 RGSVILVGGDPGIGKSTLLMQTAASLAYK--KHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIATL  162 (479)
Q Consensus        89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~--g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~  162 (479)
T Consensus       193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv--~~~~~l~~~l~--  268 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA--RDPKELAKALE--  268 (282)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEE--CCHHHHHHHHH--
T ss_conf             67279997788875788999999999997389967999807776789999999999959748993--99999999998--


Q ss_pred             HHCCCCCEEEECH
Q ss_conf             7316982899721
Q gi|254780334|r  163 ITNEKPDLVIIDS  175 (479)
Q Consensus       163 i~~~~~~~vVIDS  175 (479)
T Consensus       269 -~~~~~d~IlIDT  280 (282)
T TIGR03499       269 -RLRDKDLILIDT  280 (282)
T ss_pred             -HCCCCCEEEEEC
T ss_conf             -657989999819