HHsearch alignment for GI: 254780334 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.12 E-value=3.5e-05 Score=57.39 Aligned_cols=82 Identities=24% Similarity=0.414 Sum_probs=61.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHH
Q ss_conf 87089995498751889999999998503--98199998646----3047888875201577510000347889999999
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYK--KHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIATL 162 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~--g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~ 162 (479)
T Consensus 193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv--~~~~~l~~~l~-- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA--RDPKELAKALE-- 268 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEE--CCHHHHHHHHH--
T ss_conf 67279997788875788999999999997389967999807776789999999999959748993--99999999998--
Q ss_pred HHCCCCCEEEECH
Q ss_conf 7316982899721
Q gi|254780334|r 163 ITNEKPDLVIIDS 175 (479)
Q Consensus 163 i~~~~~~~vVIDS 175 (479)
T Consensus 269 -~~~~~d~IlIDT 280 (282)
T TIGR03499 269 -RLRDKDLILIDT 280 (282)
T ss_pred -HCCCCCEEEEEC
T ss_conf -657989999819