>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

Probab=97.57 E-value=0.004 Score=42.31 Aligned_cols=135 Identities=19% Similarity=0.307 Sum_probs=73.3 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCC----------- Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003478----------- Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETN----------- 154 (479) Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~----------- 154 (479) T Consensus 24 ~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G~-i~i~G~~~~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~~ 102 (301) T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS-VQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI 102 (301) T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHH T ss_conf 88598199999999981999999996795689777-99927513448799985376745556567888999999999997 Q ss_pred -----------HHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf -----------8999--------------------------999973169828997216876654204455636799999 Q gi|254780334|r 155 -----------VEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479) Q Consensus 155 -----------l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479) T Consensus 103 ~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~-aL~~~P~lliLDEPt----~GLD--p---~~~~~~ 172 (301) T TIGR03522 103 YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQ-ALIHDPKVLILDEPT----TGLD--P---NQLVEI 172 (301) T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHHH-HHCCCCCEEEEECCC----CCCC--H---HHHHHH T ss_conf 39998999999999998818856654827677998844599889-870799899994886----6789--8---999999 Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE Q ss_conf 99999975307978999863036654331145787753027851 Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479) Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479) T Consensus 173 ~~~l~~l~~~--~TillssH~l~e--------~e~lcdri~ii~ 206 (301) T TIGR03522 173 RNVIKNIGKD--KTIILSTHIMQE--------VEAICDRVIIIN 206 (301) T ss_pred HHHHHHHCCC--CEEEEECCCHHH--------HHHHCCEEEEEE T ss_conf 9999987599--999998785899--------998699999998

HHsearch alignment for GI: 254780334 and conserved domain: TIGR03522