HHsearch alignment for GI: 254780334 and conserved domain: TIGR03600

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.92  E-value=8.1e-24  Score=193.31  Aligned_cols=198  Identities=24%  Similarity=0.357  Sum_probs=144.5

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCCC-
Q ss_conf             666323781248888659857870899954987518899999999985-03981999986463047888875--20157-
Q gi|254780334|r   68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNTI-  143 (479)
Q Consensus        68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~-  143 (479)
T Consensus       173 ~~~Gi~TG~~~LD~~~-~Gl~~g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs~eql~~R~la~~s~i~~  251 (421)
T TIGR03600       173 ELTGLSTGLPKLDRLT-NGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINT  251 (421)
T ss_pred             CCCCCCCCCHHHHHHH-CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCH
T ss_conf             8677878807899983-699988689998546787459999999999986698389992579999999999998548977


Q ss_pred             ------------------------CCCHHEECC--CCHHHHHH---HHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf             ------------------------751000034--78899999---9973-16982899721687665420445563679
Q gi|254780334|r  144 ------------------------NSSVYIAIE--TNVEDIIA---TLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQ  193 (479)
Q Consensus       144 ------------------------~~~i~~~~e--~~l~~il~---~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ  193 (479)
T Consensus       252 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~~l~livIDYLqLi~~~~---~~~r~~e  328 (421)
T TIGR03600       252 GNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTR---GRDRNEE  328 (421)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCC---CCCHHHH
T ss_conf             6665289998999999999998616878996699887678999999999862898699975786537888---8888999


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CCCHHHHHHHHHEEEEEECCC----CCCCCCCEEEEEEE
Q ss_conf             999999999975307978999863036654-----------331145787753027851555----66654421567632
Q gi|254780334|r  194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQ-----------IAGPRVIEHMVDAVLYFEGGT----RNTQYDYRILRSVK  258 (479)
Q Consensus       194 vre~~~~L~~~AK~~~i~vilighvTK~G~-----------iAGp~~LeH~VD~vl~~ege~----~~~~~~~R~Lr~~K  258 (479)
T Consensus       329 i~~Isr~LK~lAkel~ipVi~lsQLnR~~e~R~dkrP~lsDLReSG~IEqdADvV~fl~R~~~y~~~~~~~~~~e~ivaK  408 (421)
T TIGR03600       329 LGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAGVAELILAK  408 (421)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEE
T ss_conf             99999999999999799789970578652336888865434443357420474899961333347888888838999981


Q ss_pred             ECCCCCCCEEE
Q ss_conf             02567651279
Q gi|254780334|r  259 NRFGPTDEIGV  269 (479)
Q Consensus       259 NRfG~t~e~gv  269 (479)
T Consensus       409 nRnG~~G~v~l  419 (421)
T TIGR03600       409 NRHGPTGTVEL  419 (421)
T ss_pred             CCCCCCCEEEE
T ss_conf             47899843875