HHsearch alignment for GI: 254780334 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.92 E-value=8.1e-24 Score=193.31 Aligned_cols=198 Identities=24% Similarity=0.357 Sum_probs=144.5
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCCC-
Q ss_conf 666323781248888659857870899954987518899999999985-03981999986463047888875--20157-
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNTI- 143 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~- 143 (479)
T Consensus 173 ~~~Gi~TG~~~LD~~~-~Gl~~g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs~eql~~R~la~~s~i~~ 251 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLT-NGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINT 251 (421)
T ss_pred CCCCCCCCCHHHHHHH-CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCH
T ss_conf 8677878807899983-699988689998546787459999999999986698389992579999999999998548977
Q ss_pred ------------------------CCCHHEECC--CCHHHHHH---HHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf ------------------------751000034--78899999---9973-16982899721687665420445563679
Q gi|254780334|r 144 ------------------------NSSVYIAIE--TNVEDIIA---TLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 144 ------------------------~~~i~~~~e--~~l~~il~---~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
T Consensus 252 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~~l~livIDYLqLi~~~~---~~~r~~e 328 (421)
T TIGR03600 252 GNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTR---GRDRNEE 328 (421)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCC---CCCHHHH
T ss_conf 6665289998999999999998616878996699887678999999999862898699975786537888---8888999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CCCHHHHHHHHHEEEEEECCC----CCCCCCCEEEEEEE
Q ss_conf 999999999975307978999863036654-----------331145787753027851555----66654421567632
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQ-----------IAGPRVIEHMVDAVLYFEGGT----RNTQYDYRILRSVK 258 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~-----------iAGp~~LeH~VD~vl~~ege~----~~~~~~~R~Lr~~K 258 (479)
T Consensus 329 i~~Isr~LK~lAkel~ipVi~lsQLnR~~e~R~dkrP~lsDLReSG~IEqdADvV~fl~R~~~y~~~~~~~~~~e~ivaK 408 (421)
T TIGR03600 329 LGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAGVAELILAK 408 (421)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEE
T ss_conf 99999999999999799789970578652336888865434443357420474899961333347888888838999981
Q ss_pred ECCCCCCCEEE
Q ss_conf 02567651279
Q gi|254780334|r 259 NRFGPTDEIGV 269 (479)
Q Consensus 259 NRfG~t~e~gv 269 (479)
T Consensus 409 nRnG~~G~v~l 419 (421)
T TIGR03600 409 NRHGPTGTVEL 419 (421)
T ss_pred CCCCCCCEEEE
T ss_conf 47899843875