HHsearch alignment for GI: 254780334 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=100.00 E-value=1e-31 Score=250.94 Aligned_cols=202 Identities=26% Similarity=0.428 Sum_probs=162.1
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCH--HHHHHHHHHCCC-
Q ss_conf 237812488886598578708999549875188999999999850------39819999864630--478888752015-
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY------KKHRITYVSGEEAI--GQIRLRAQRLNT- 142 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~------~g~~vlYvS~EEs~--~Qi~~Ra~Rl~~- 142 (479)
T Consensus 1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~~Rl~qia~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 98885789965079964787999999999849999999999984247536789629999536775889999999971347
Q ss_pred ---CCCCHHEECCCCHHHHH-------HHHHHCCCCCEEEECHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHCC
Q ss_conf ---77510000347889999-------999731698289972168766542044556---36799999999999753079
Q gi|254780334|r 143 ---INSSVYIAIETNVEDII-------ATLITNEKPDLVIIDSIQTLWSQTAESSPG---TVIQVRTSVQAMIQYAKKNG 209 (479)
Q Consensus 143 ---~~~~i~~~~e~~l~~il-------~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G---svsQvre~~~~L~~~AK~~~ 209 (479)
T Consensus 81 ~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~v~LvVIDSia~l~r~e~~~~~~~~~r~~~l~~~~~~L~~lA~~~~ 160 (235)
T cd01123 81 PEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFN 160 (235)
T ss_pred HHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 24542254796379999999999999998730377239999610455566644886447899999999999999999809
Q ss_pred CEEEEEEEECCC--C---------CCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCE
Q ss_conf 789998630366--5---------43311457877530278515556665442156763202567651279985156631
Q gi|254780334|r 210 VAMVLVGHVTKE--G---------QIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQ 278 (479)
Q Consensus 210 i~vilighvTK~--G---------~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~ 278 (479)
T Consensus 161 ~aVvvtNqvt~~~~~~~~~~~~~~~palG~~w~h~v~~rl~l~~~----~~~~R~l~v~ks~~~p~~~~-~f~It~~Gir 235 (235)
T cd01123 161 VAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKG----RGEERIAKIVDSPHLPEGEA-VFAITEEGIR 235 (235)
T ss_pred CEEEEECEEEEECCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEEC----CCCEEEEEEEECCCCCCEEE-EEEEECCCCC
T ss_conf 799996806550676424578864345026678538599999947----99718999986899998179-9998288579