HHsearch alignment for GI: 254780334 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.87  E-value=3.4e-21  Score=174.19  Aligned_cols=166  Identities=24%  Similarity=0.244  Sum_probs=128.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH------HEEC----------CC--
Q ss_conf             89995498751889999999998503981999986463047888875201577510------0003----------47--
Q gi|254780334|r   92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV------YIAI----------ET--  153 (479)
Q Consensus        92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i------~~~~----------e~--  153 (479)
T Consensus         1 stLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~~~   80 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR   80 (187)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHH
T ss_conf             91587689999999999999999876997899995079999999999839985898645856899626200220333236


Q ss_pred             -CHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CCCCCCCHHHHH
Q ss_conf             -889999999731698289972168766542044556367999999999997530797899986303-665433114578
Q gi|254780334|r  154 -NVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVT-KEGQIAGPRVIE  231 (479)
Q Consensus       154 -~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvT-K~G~iAGp~~Le  231 (479)
T Consensus        81 ~~l~~~i~~~i~~~~~~~vVIDSi~~l~~~~-------~~~~~~~~~~l~~~l~~~~~t~ll~~e~~~~~~~~~~~~~~~  153 (187)
T cd01124          81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLME-------QSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVE  153 (187)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCHHHHHHCC-------HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEE
T ss_conf             7899999999998499899994868875256-------666899999999999976996899997425667667888477


Q ss_pred             HHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             77530278515556665442156763202567651
Q gi|254780334|r  232 HMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDE  266 (479)
Q Consensus       232 H~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e  266 (479)
T Consensus       154 ~l~DgiI~L~~~~-~~~~~~R~l~I~KmR-gs~H~  186 (187)
T cd01124         154 YLVDGVIRLRLDE-EGGRLRRSLSVVKMR-GGPHD  186 (187)
T ss_pred             EEEEEEEEEEEEE-CCCEEEEEEEEEECC-CCCCC
T ss_conf             9978999997880-499799999999858-99899