HHsearch alignment for GI: 254780334 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.87 E-value=3.4e-21 Score=174.19 Aligned_cols=166 Identities=24% Similarity=0.244 Sum_probs=128.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH------HEEC----------CC--
Q ss_conf 89995498751889999999998503981999986463047888875201577510------0003----------47--
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV------YIAI----------ET-- 153 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i------~~~~----------e~-- 153 (479)
T Consensus 1 stLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHH
T ss_conf 91587689999999999999999876997899995079999999999839985898645856899626200220333236
Q ss_pred -CHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CCCCCCCHHHHH
Q ss_conf -889999999731698289972168766542044556367999999999997530797899986303-665433114578
Q gi|254780334|r 154 -NVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVT-KEGQIAGPRVIE 231 (479)
Q Consensus 154 -~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvT-K~G~iAGp~~Le 231 (479)
T Consensus 81 ~~l~~~i~~~i~~~~~~~vVIDSi~~l~~~~-------~~~~~~~~~~l~~~l~~~~~t~ll~~e~~~~~~~~~~~~~~~ 153 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLME-------QSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVE 153 (187)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCHHHHHHCC-------HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEE
T ss_conf 7899999999998499899994868875256-------666899999999999976996899997425667667888477
Q ss_pred HHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 77530278515556665442156763202567651
Q gi|254780334|r 232 HMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDE 266 (479)
Q Consensus 232 H~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e 266 (479)
T Consensus 154 ~l~DgiI~L~~~~-~~~~~~R~l~I~KmR-gs~H~ 186 (187)
T cd01124 154 YLVDGVIRLRLDE-EGGRLRRSLSVVKMR-GGPHD 186 (187)
T ss_pred EEEEEEEEEEEEE-CCCEEEEEEEEEECC-CCCCC
T ss_conf 9978999997880-499799999999858-99899