HHsearch alignment for GI: 254780334 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.95 E-value=0.0036 Score=42.69 Aligned_cols=90 Identities=16% Similarity=0.284 Sum_probs=58.1
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHH
Q ss_conf 24888865985787089995498751889999999998503981999986463047888875201577510000347889
Q gi|254780334|r 77 DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVE 156 (479)
Q Consensus 77 ~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~ 156 (479)
T Consensus 70 ~~l~~~~~---~~~GlilitGptGSGKtTtl~a~l~~~~~~~~~--i~tiEdPvE~~~~~~~Q~~v~~-----~~g~~~~ 139 (264)
T cd01129 70 EIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKN--IITVEDPVEYQIPGINQVQVNE-----KAGLTFA 139 (264)
T ss_pred HHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCE--EEEEECCCCCCCCCCCEEEECC-----CCCCCHH
T ss_conf 99999970---899889997899997799999999864368850--8998676314568873576166-----6687899
Q ss_pred HHHHHHHHCCCCCEEEECHHH
Q ss_conf 999999731698289972168
Q gi|254780334|r 157 DIIATLITNEKPDLVIIDSIQ 177 (479)
Q Consensus 157 ~il~~~i~~~~~~~vVIDSIQ 177 (479)
T Consensus 140 ~~lr~~-LR~dPDvi~igEiR 159 (264)
T cd01129 140 RGLRAI-LRQDPDIIMVGEIR 159 (264)
T ss_pred HHHHHH-HCCCCCEEEECCCC
T ss_conf 999998-55699988746889