HHsearch alignment for GI: 254780334 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.58 E-value=0.00046 Score=49.19 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=82.8
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH---HCCCCCCCHHEECCCCH
Q ss_conf 888865985787089995498751889999999998503981999986463047888875---20157751000034788
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ---RLNTINSSVYIAIETNV 155 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~---Rl~~~~~~i~~~~e~~l 155 (479)
T Consensus 14 ~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~-~riv--tiEd~~El-~l~~~~~v~l~~~~~~~~~~~~~~~ 89 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERII--TIEDTAEL-QLPHPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCC-CCEE--EECCCHHH-CCCCCCEEEEEEECCCCCCCCEECH
T ss_conf 999999999859989998999998999999999613345-6459--84153540-4777756888860464578650349
Q ss_pred HHHHHHHHHCCCCCEEEECHHHH-----HHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
Q ss_conf 99999997316982899721687-----665420445563679-----99999999997530797899986303665433
Q gi|254780334|r 156 EDIIATLITNEKPDLVIIDSIQT-----LWSQTAESSPGTVIQ-----VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIA 225 (479)
Q Consensus 156 ~~il~~~i~~~~~~~vVIDSIQt-----l~~~~~~s~~GsvsQ-----vre~~~~L~~~AK~~~i~vilighvTK~G~iA 225 (479)
T Consensus 90 ~~li~~aL-R~~pd~iivGEiR~~Ea~~~l~a~~tGh~g~ltTiHa~s~~~ai~Rl~~l~~~~~~~--------~~---~ 157 (186)
T cd01130 90 ADLLRSAL-RMRPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVPLG--------RP---L 157 (186)
T ss_pred HHHHHHHC-CCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--------HH---H
T ss_conf 99988736-689973731756839999999999748986030315899999999999887547999--------99---9
Q ss_pred CHHHHHHHHHEEEEEEC
Q ss_conf 11457877530278515
Q gi|254780334|r 226 GPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 226 Gp~~LeH~VD~vl~~eg 242 (479)
T Consensus 158 ~~~~ia~~id~vV~~~~ 174 (186)
T cd01130 158 LREQIKEAIDVIVHIAR 174 (186)
T ss_pred HHHHHHHHCCEEEEEEE
T ss_conf 99999975779999988