HHsearch alignment for GI: 254780334 and conserved domain: cd01133

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=98.01  E-value=0.00044  Score=49.33  Aligned_cols=170  Identities=15%  Similarity=0.169  Sum_probs=95.5

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHC---CCCC
Q ss_conf             6632378124888865985787089995498751889999999998503-98199998646304788887520---1577
Q gi|254780334|r   69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK-KHRITYVSGEEAIGQIRLRAQRL---NTIN  144 (479)
Q Consensus        69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~-g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~  144 (479)
T Consensus        50 ~e~l~TGIr~ID~l~--pigkGQR~~I~~~~g~GKt~ll~~ii~~~~~~~~~v~V~~~IGer~~ev~~~~~~~~~~~~l~  127 (274)
T cd01133          50 TEILETGIKVIDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLS  127 (274)
T ss_pred             CCCCCCCCEEEECCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCC
T ss_conf             873115866664446--614785778757999982368999999998508987999984255488999999720356653


Q ss_pred             CCHHEECCCC---HHH---------HHHHHH-HCCCCCEEEECHHHHHH---------HHHHC---CCCCCHH-HHHHHH
Q ss_conf             5100003478---899---------999997-31698289972168766---------54204---4556367-999999
Q gi|254780334|r  145 SSVYIAIETN---VED---------IIATLI-TNEKPDLVIIDSIQTLW---------SQTAE---SSPGTVI-QVRTSV  198 (479)
Q Consensus       145 ~~i~~~~e~~---l~~---------il~~~i-~~~~~~~vVIDSIQtl~---------~~~~~---s~~Gsvs-Qvre~~  198 (479)
T Consensus       128 ~tvvv~~tad~~~~~r~~~~~~a~aiAE~frd~~G~dVLll~DslTr~A~A~reis~~~g~~P~~~gyp~~l~~~~~~l~  207 (274)
T cd01133         128 KTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQ  207 (274)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             37999834555405789999999999999997289859999718689999999888862899986666830788999999


Q ss_pred             HHHHHHHHHCCCEEEEEEEECCCCCCCCHH--HHHHHHHEEEEEEC
Q ss_conf             999997530797899986303665433114--57877530278515
Q gi|254780334|r  199 QAMIQYAKKNGVAMVLVGHVTKEGQIAGPR--VIEHMVDAVLYFEG  242 (479)
Q Consensus       199 ~~L~~~AK~~~i~vilighvTK~G~iAGp~--~LeH~VD~vl~~eg  242 (479)
T Consensus       208 ER~~-~~~~GSiT~i~tv~-~~~dD~~dpi~~~~~~i~dG~ivLsr  251 (274)
T cd01133         208 ERIT-STKKGSITSVQAVY-VPADDLTDPAPATTFAHLDATTVLSR  251 (274)
T ss_pred             HHHC-CCCCCCEEEEEEEE-CCCCCCCCCHHHHHHHHHCEEEEECH
T ss_conf             9744-88898746888997-45888766177888774072999858