>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.

Probab=97.37 E-value=0.016 Score=37.88 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=89.7 Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH---CCC- Q ss_conf 5666323781248888659857870899954987518899999999985039819999864630478888752---015- Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR---LNT- 142 (479) Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R---l~~- 142 (479) T Consensus 136 ~~~~PL~TGir~ID~l~--Pig~Gqr~~I~g~~g~GKT~l~~~i~k~-~~-~dv~Vyv~iGeRg~ev~e~l~~f~el~~~ 211 (369) T cd01134 136 PPNEPLLTGQRVLDTLF--PVVKGGTAAIPGPFGCGKTVIQQSLSKY-SN-SDIVIYVGCGERGNEMTEVLEEFPELTDP 211 (369) T ss_pred CCCCCHHHHHHHHHHHC--CCCCCCEEEEECCCCCCHHHHHHHHHHC-CC-CCEEEEEEEECCHHHHHHHHHHHHHHCCC T ss_conf 99986265356887425--3214764677668776899999999853-79-98899999711418999999986774133 Q ss_pred ------CCCCHHEECCCCHH------------HHHHHHHHCCCCCEEEECHHHHHH---------HHHH---CCCCCCHH Q ss_conf ------77510000347889------------999999731698289972168766---------5420---44556367 Q gi|254780334|r 143 ------INSSVYIAIETNVE------------DIIATLITNEKPDLVIIDSIQTLW---------SQTA---ESSPGTVI 192 (479) Q Consensus 143 ------~~~~i~~~~e~~l~------------~il~~~i~~~~~~~vVIDSIQtl~---------~~~~---~s~~Gsvs 192 (479) T Consensus 212 ~~g~~~~~rtvvVa~ts~~p~~~r~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l~e~P~~egYP~~l~ 291 (369) T cd01134 212 VTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLG 291 (369) T ss_pred CCCCCHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH T ss_conf 34664102036874277799889988898999999999968988799807589999998899886389987657193199 Q ss_pred HHHHHHHHHHHHH-H-------HCCCEEEEEEEE-CCCCCCCCHH--HHHHHHHEEEEEEC Q ss_conf 9999999999975-3-------079789998630-3665433114--57877530278515 Q gi|254780334|r 193 QVRTSVQAMIQYA-K-------KNGVAMVLVGHV-TKEGQIAGPR--VIEHMVDAVLYFEG 242 (479) Q Consensus 193 Qvre~~~~L~~~A-K-------~~~i~vilighv-TK~G~iAGp~--~LeH~VD~vl~~eg 242 (479) T Consensus 292 ---s~l~~l~ERag~~~~~~~~~~~GSiT~~~~V~~~ggD~s~pI~~~~~si~d~~i~L~~ 349 (369) T cd01134 292 ---ARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDK 349 (369) T ss_pred ---HHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCEEEEECH T ss_conf ---8888998721443236899998117789899756988677578888766215889858

HHsearch alignment for GI: 254780334 and conserved domain: cd01134