HHsearch alignment for GI: 254780334 and conserved domain: cd01136
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.68 E-value=0.0023 Score=44.08 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=65.3
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCC
Q ss_conf 663237812488886598578708999549875188999999999850398199998646304788887520---15775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~ 145 (479)
T Consensus 50 ~e~l~TGI~~ID~l~--pigrGQR~~Ifg~~g~GKt~Ll~~i~~~~~-~-~v~V~~~IGer~rev~e~~~~~~~~~~l~~ 125 (326)
T cd01136 50 DEVLPTGVRAIDGLL--TVGKGQRLGIFAGSGVGKSTLLGMIARGTT-A-DVNVIALIGERGREVREFIEKDLGEEGLKR 125 (326)
T ss_pred CCCCCCCCCHHCCCC--CCCCCCEEEEECCCCCCCCHHHHHHHHCCC-C-CEEEEEEECCCHHHHHHHHHHHHCCCCCCC
T ss_conf 875115770420026--624798787436999984667876864146-7-759999605338899999998624565322
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 100003478---89---------99999973169828997216876
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
T Consensus 126 tvvv~atad~~~~~r~~a~~~a~~~AEyfrd~G~dVL~~~Dsltr~ 171 (326)
T cd01136 126 SVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 2899606889989999988877777889997587337875246899