HHsearch alignment for GI: 254780334 and conserved domain: cd02035
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.03 E-value=0.0011 Score=46.34 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=33.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 899954987518899999999985039819999864
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~D 36 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTD 36 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 989978996619999999999999689949999589