HHsearch alignment for GI: 254780334 and conserved domain: cd03215
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.61 E-value=0.0012 Score=46.21 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=73.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHH-HHHHCCCCCCC---HHEECCCC-HHH--
Q ss_conf 857870899954987518899999999985039819999864630-47888-87520157751---00003478-899--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI-GQIRL-RAQRLNTINSS---VYIAIETN-VED-- 157 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~-~Qi~~-Ra~Rl~~~~~~---i~~~~e~~-l~~-- 157 (479)
T Consensus 22 ~v~~GEi~~liG~nGaGKSTll~~l~G~~~p~~G~I~-~~G~~~~~~~~~~~~~~~i~~vp~~r~~~~l~~~~~v~en~~ 100 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT-LDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EECCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEE-ECCEECCCCCHHHHHHCCEEEEEHHHHHCCCCCCCCHHHHHH
T ss_conf 9859969999888999926377876698678877599-999998864999999789699602076625678990999951
Q ss_pred -------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
Q ss_conf -------------9999973169828997216876654204455636799999999999753079789998630366543
Q gi|254780334|r 158 -------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQI 224 (479)
Q Consensus 158 -------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~i 224 (479)
T Consensus 101 ~~~~LSGG~~Qrv~lAra-l~~~p~llllDEPT----~gLD--~~~---~~~i~~~i~~l~-~~g~tvi~isHd------ 163 (182)
T cd03215 101 LSSLLSGGNQQKVVLARW-LARDPRVLILDEPT----RGVD--VGA---KAEIYRLIRELA-DAGKAVLLISSE------ 163 (182)
T ss_pred CCCCCCHHHHHHHHHHHH-HHCCCCEEEECCCC----CCCC--HHH---HHHHHHHHHHHH-HCCCEEEEEECC------
T ss_conf 855799899999999999-97199999986875----4589--999---999999999999-789999999687------
Q ss_pred CCHHHHHHHHHEEEEEE
Q ss_conf 31145787753027851
Q gi|254780334|r 225 AGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 225 AGp~~LeH~VD~vl~~e 241 (479)
T Consensus 164 --l~~~~~~~Drv~vl~ 178 (182)
T cd03215 164 --LDELLGLCDRILVMY 178 (182)
T ss_pred --HHHHHHHCCEEEEEC
T ss_conf --999999799999983