HHsearch alignment for GI: 254780334 and conserved domain: cd03217
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.87 E-value=0.00049 Score=49.00 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH-C-CCCCEEEEECCCCHHH-HHHHHHH-CCCCCCCHHEECCCCHHHHH--
Q ss_conf 857870899954987518899999999985-0-3981999986463047-8888752-01577510000347889999--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLA-Y-KKHRITYVSGEEAIGQ-IRLRAQR-LNTINSSVYIAIETNVEDII-- 159 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~-~g~~vlYvS~EEs~~Q-i~~Ra~R-l~~~~~~i~~~~e~~l~~il-- 159 (479)
T Consensus 22 ~v~~Gei~~iiGpnGaGKSTLl~~i~G~~~~~~~~G~-I~~~g~~i~~~~~~~~~~~gi~~~~q~~~~~~~~~~~~~l~~ 100 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE-ILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCE-EEECCEECCCCCHHHHHHCCEEEECCCHHHCCCCCHHHHHHH
T ss_conf 8879989999968999999999997077777852007-999999988699999997694896367687079849999976
Q ss_pred ---------------HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
Q ss_conf ---------------99973169828997216876654204455636799999999999753079789998630366543
Q gi|254780334|r 160 ---------------ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQI 224 (479)
Q Consensus 160 ---------------~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~i 224 (479)
T Consensus 101 ~~~~LSGGekqrv~iara-l~~~P~lllLDEPt----sgLD-----~~~~~~i~~~i~~l~~-~g~tiiiitH~------ 163 (200)
T cd03217 101 VNEGFSGGEKKRNEILQL-LLLEPDLAILDEPD----SGLD-----IDALRLVAEVINKLRE-EGKSVLIITHY------ 163 (200)
T ss_pred HCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCC----CCCC-----HHHHHHHHHHHHHHHH-CCCEEEEEEEC------
T ss_conf 463679999999999999-96099999996962----2699-----9999999999999985-79999999963------
Q ss_pred CCHHHHHHH-HHEEEEEE
Q ss_conf 311457877-53027851
Q gi|254780334|r 225 AGPRVIEHM-VDAVLYFE 241 (479)
Q Consensus 225 AGp~~LeH~-VD~vl~~e 241 (479)
T Consensus 164 --~~~~~~~~~Drv~vl~ 179 (200)
T cd03217 164 --QRLLDYIKPDRVHVLY 179 (200)
T ss_pred --HHHHHHHCCCEEEEEE
T ss_conf --6877664699999987