HHsearch alignment for GI: 254780334 and conserved domain: cd03218

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.62  E-value=0.0031  Score=43.16  Aligned_cols=136  Identities=16%  Similarity=0.286  Sum_probs=71.9

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHHHHHH-CCCCCCCHHEECCCC---------
Q ss_conf             85787089995498751889999999998503981999986463047-8888752-015775100003478---------
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ-IRLRAQR-LNTINSSVYIAIETN---------  154 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q-i~~Ra~R-l~~~~~~i~~~~e~~---------  154 (479)
T Consensus        22 ~v~~Gei~~llGpNGAGKSTll~~i~Gl~~p~~G~-I~~~g~di~~~~~~~r~r~gig~~pQ~~~l~~~ltV~enl~~~~  100 (232)
T cd03218          22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK-ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVL  100 (232)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             98999599999999961999999997799998629-99999999999999999719798777776788888999999999


Q ss_pred             -------------HHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             -------------8999--------------------------9999731698289972168766542044556367999
Q gi|254780334|r  155 -------------VEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR  195 (479)
Q Consensus       155 -------------l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr  195 (479)
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~iAraL-~~~P~illlDEPt----~GLD--p~~---~~  170 (232)
T cd03218         101 EIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL-ATNPKFLLLDEPF----AGVD--PIA---VQ  170 (232)
T ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC--HHH---HH
T ss_conf             972999999999999999876982465394255999999999999999-6699999988985----6889--999---99


Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             9999999975307978999863036654331145787753027851
Q gi|254780334|r  196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       171 ~i~~~i~~l-~~~g~tili~tH~l--------~~~~~~~drv~vl~  207 (232)
T cd03218         171 DIQKIIKIL-KDRGIGVLITDHNV--------RETLSITDRAYIIY  207 (232)
T ss_pred             HHHHHHHHH-HHCCCEEEEEECCH--------HHHHHHCCEEEEEE
T ss_conf             999999999-95899999992839--------99998699999997