HHsearch alignment for GI: 254780334 and conserved domain: cd03218
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.62 E-value=0.0031 Score=43.16 Aligned_cols=136 Identities=16% Similarity=0.286 Sum_probs=71.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHHHHHH-CCCCCCCHHEECCCC---------
Q ss_conf 85787089995498751889999999998503981999986463047-8888752-015775100003478---------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ-IRLRAQR-LNTINSSVYIAIETN--------- 154 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q-i~~Ra~R-l~~~~~~i~~~~e~~--------- 154 (479)
T Consensus 22 ~v~~Gei~~llGpNGAGKSTll~~i~Gl~~p~~G~-I~~~g~di~~~~~~~r~r~gig~~pQ~~~l~~~ltV~enl~~~~ 100 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK-ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVL 100 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 98999599999999961999999997799998629-99999999999999999719798777776788888999999999
Q ss_pred -------------HHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf -------------8999--------------------------9999731698289972168766542044556367999
Q gi|254780334|r 155 -------------VEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 155 -------------l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~iAraL-~~~P~illlDEPt----~GLD--p~~---~~ 170 (232)
T cd03218 101 EIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL-ATNPKFLLLDEPF----AGVD--PIA---VQ 170 (232)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC--HHH---HH
T ss_conf 972999999999999999876982465394255999999999999999-6699999988985----6889--999---99
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999975307978999863036654331145787753027851
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 171 ~i~~~i~~l-~~~g~tili~tH~l--------~~~~~~~drv~vl~ 207 (232)
T cd03218 171 DIQKIIKIL-KDRGIGVLITDHNV--------RETLSITDRAYIIY 207 (232)
T ss_pred HHHHHHHHH-HHCCCEEEEEECCH--------HHHHHHCCEEEEEE
T ss_conf 999999999-95899999992839--------99998699999997