HHsearch alignment for GI: 254780334 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.51 E-value=0.0043 Score=42.12 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8578708999549875188999999999850398199998646
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
T Consensus 22 ~i~~Gei~gliG~nGaGKSTL~~~i~Gl~~p~~G~-I~~~G~~ 63 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS-VLFDGED 63 (236)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEE
T ss_conf 98899899999899973999999996798788318-9999996