HHsearch alignment for GI: 254780334 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.23 E-value=0.0055 Score=41.35 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=67.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHH----HHHH
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003478899----9999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVED----IIAT 161 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~----il~~ 161 (479)
T Consensus 22 ~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i-~~~~~~~-----------------i~y~~QLSgGqkqr~~la~ 83 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV-TWGSTVK-----------------IGYFEQLSGGEKMRLALAK 83 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCCCE-----------------EEEEHHCCHHHHHHHHHHH
T ss_conf 987999999998999849999999848988985099-9999608-----------------9987007999999999999
Q ss_pred HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 97316982899721687665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 162 LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 162 ~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 84 a-l~~~p~iliLDEPt----~~LD~---------~~~~~i~~~l~~~~~tii~vsHd--------~~~~~~~~drii~l~ 141 (144)
T cd03221 84 L-LLENPNLLLLDEPT----NHLDL---------ESIEALEEALKEYPGTVILVSHD--------RYFLDQVATKIIELE 141 (144)
T ss_pred H-HCCCCCEEEEECCC----CCCCH---------HHHHHHHHHHHHCCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 9-72599899995775----55899---------99999999999709999999679--------899998799999992