HHsearch alignment for GI: 254780334 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.75 E-value=0.00067 Score=48.00 Aligned_cols=127 Identities=19% Similarity=0.191 Sum_probs=77.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEE-CCCCHHHHHHHHHH
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000-34788999999973
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIA-IETNVEDIIATLIT 164 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~-~e~~l~~il~~~i~ 164 (479)
T Consensus 21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~-~g~~-~~----------~~pq~~~LSGGqrQRv~-iAra-l 86 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW-DGIT-PV----------YKPQYIDLSGGELQRVA-IAAA-L 86 (177)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE-CCCC-EE----------CCCCCCCCCHHHHHHHH-HHHH-H
T ss_conf 55899899998999999999999996886788994666-6861-22----------15551507989999999-9999-8
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECC
Q ss_conf 1698289972168766542044556367999999999997530797899986303665433114578775302785155
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGG 243 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege 243 (479)
T Consensus 87 ~~~p~lllLDEPt----s~LD-----~~~r~~i~~~ik~l~~~~~~Tvl~vsHd--------l~~a~~~aDrI~vl~g~ 148 (177)
T cd03222 87 LRNATFYLFDEPS----AYLD-----IEQRLNAARAIRRLSEEGKKTALVVEHD--------LAVLDYLSDRIHVFEGE 148 (177)
T ss_pred HCCCCEEEECCCC----CCCC-----HHHHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEECC
T ss_conf 2399999974886----5389-----9999999999999999659779998588--------99999869999999389