HHsearch alignment for GI: 254780334 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.80 E-value=0.00026 Score=50.96 Aligned_cols=135 Identities=24% Similarity=0.329 Sum_probs=70.7
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC--------CEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCH
Q ss_conf 598578708999549875188999999999850398--------199998646304788887520157751000034788
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKH--------RITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNV 155 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~--------~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l 155 (479)
T Consensus 21 sl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tl~-e~l~~p~~~~LSGGqkQR 99 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLR-EQLIYPWDDVLSGGEQQR 99 (166)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCHH-HHHHCCCCCCCCHHHHHH
T ss_conf 8898899999999589998899999986987699867997699879998564665887599-996361546789999999
Q ss_pred HHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 99999997316982899721687665420445563679999999999975307978999863036654331145787753
Q gi|254780334|r 156 EDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVD 235 (479)
Q Consensus 156 ~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD 235 (479)
T Consensus 100 va-lARal-~~~p~iliLDEpT----s~LD~---------~~~~~l~~~l~~~~~Tvi~VtH~--------~~-~~~~aD 155 (166)
T cd03223 100 LA-FARLL-LHKPKFVFLDEAT----SALDE---------ESEDRLYQLLKELGITVISVGHR--------PS-LWKFHD 155 (166)
T ss_pred HH-HHHHH-HCCCCEEEECCCC----CCCCH---------HHHHHHHHHHHHCCCEEEEEECC--------HH-HHHCCC
T ss_conf 99-99999-6499999975853----32899---------99999999999779989999434--------69-997299
Q ss_pred EEEEEECC
Q ss_conf 02785155
Q gi|254780334|r 236 AVLYFEGG 243 (479)
Q Consensus 236 ~vl~~ege 243 (479)
T Consensus 156 rvl~Ldg~ 163 (166)
T cd03223 156 RVLDLDGE 163 (166)
T ss_pred EEEEEECC
T ss_conf 99999189