HHsearch alignment for GI: 254780334 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.0044 Score=42.02 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=66.8
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHH---
Q ss_conf 59857870899954987518899999999985039--8199998646304788887520157751000034788999---
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK--HRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDI--- 158 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g--~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i--- 158 (479)
T Consensus 27 s~~i~~Ge~~~llGpnGaGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~~~~~---~igyv~q~~~~~~~~tv~e~l~~ 102 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAG-RKTAGVITGEILINGRPLDKNFQR---STGYVEQQDVHSPNLTVREALRF 102 (192)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC-CCCCCCEEEEEEECCEECCHHHHH---HEEEEECCHHCCCCCHHHHHHHH
T ss_conf 88992883999999999988999999837-987883178999878276677562---27999411330734549999986
Q ss_pred ----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf ----------------9999731698289972168766542044556367999999999997530797899986303665
Q gi|254780334|r 159 ----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG 222 (479)
Q Consensus 159 ----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G 222 (479)
T Consensus 103 ~~~l~~LS~gqrqrv~iA~a-L~~~P~lllLDEPt----~gLD~-----~~~~~i~~~l~~l~~-~g~tiii~th~~--- 168 (192)
T cd03232 103 SALLRGLSVEQRKRLTIGVE-LAAKPSILFLDEPT----SGLDS-----QAAYNIVRFLKKLAD-SGQAILCTIHQP--- 168 (192)
T ss_pred HHHHHCCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCCH-----HHHHHHHHHHHHHHH-CCCEEEEEECCC---
T ss_conf 67773379767658999999-84499889984887----68898-----999999999999996-999999998363---
Q ss_pred CCCCHHHHHHHHHEEEEEE
Q ss_conf 4331145787753027851
Q gi|254780334|r 223 QIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 223 ~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 169 ----~~~i~~~~Driivl~ 183 (192)
T cd03232 169 ----SASIFEKFDRLLLLK 183 (192)
T ss_pred ----HHHHHHHCCEEEEEC
T ss_conf ----799998799999997