HHsearch alignment for GI: 254780334 and conserved domain: cd03235
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.50 E-value=0.0029 Score=43.32 Aligned_cols=133 Identities=20% Similarity=0.312 Sum_probs=70.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC----------------------
Q ss_conf 8578708999549875188999999999850398199998646304788887520157----------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI---------------------- 143 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~---------------------- 143 (479)
T Consensus 21 ~i~~Ge~~~liGpNGaGKSTllk~i~Gl~~p~~G~i-~i~g~~-~~~~~---~~igyv~Q~~~~~~~~~ltv~e~v~~~~ 95 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI-RVFGKP-LEKER---KRIGYVPQRRSIDRDFPISVRDVVLMGL 95 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEE-HHHHC---CCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 985998999999999869999999976878897589-999998-50421---8289973563335558973999998577
Q ss_pred ----------CCCH-----HEECCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf ----------7510-----00034788999-----------------999973169828997216876654204455636
Q gi|254780334|r 144 ----------NSSV-----YIAIETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 144 ----------~~~i-----~~~~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkQRv~iAraL-~~~P~lLlLDEPt----sgLD-----~ 165 (213)
T cd03235 96 YGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARAL-VQDPDLLLLDEPF----AGVD-----P 165 (213)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC-----H
T ss_conf 6543222688299999999999987999998198465798999999999999-6699999981886----6789-----9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 799999999999753079789998630366543311457877530278515
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
T Consensus 166 ~~~~~~~~~i~~l-~~~g~tii~vtHd--------l~~~~~~~drii~l~~ 207 (213)
T cd03235 166 KTQEDIYELLREL-RREGMTILVVTHD--------LGLVLEYFDRVLLLNR 207 (213)
T ss_pred HHHHHHHHHHHHH-HHCCCEEEEEECC--------HHHHHHHCCEEEEECC
T ss_conf 9999999999999-9689999999079--------8999997999999999