HHsearch alignment for GI: 254780334 and conserved domain: cd03236

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.08  E-value=0.013  Score=38.62  Aligned_cols=50  Identities=30%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             CCCCCCCCCHHHHHHHCCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             666323781248888659857-87089995498751889999999998503981
Q gi|254780334|r   68 EESRIQTHIDELDRVTGGGFV-RGSVILVGGDPGIGKSTLLMQTAASLAYKKHR  120 (479)
Q Consensus        68 ~~~Ri~TGi~eLDrvLGGGl~-~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~  120 (479)
T Consensus         6 ~~~~yg~~~~~l~~-L--~ipk~GEi~gLiGpNGaGKSTLlk~i~Gll~P~~G~   56 (255)
T cd03236           6 PVHRYGPNSFKLHR-L--PVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGK   56 (255)
T ss_pred             CCEECCCCCEEEEC-C--CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf             72135899736517-8--989898099998999970999999996798688754