HHsearch alignment for GI: 254780334 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.75 E-value=0.00072 Score=47.79 Aligned_cols=142 Identities=23% Similarity=0.329 Sum_probs=80.3
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--------------HHHHH-HHHHHCCCCCC-C
Q ss_conf 65985787089995498751889999999998503981999986463--------------04788-88752015775-1
Q gi|254780334|r 83 TGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA--------------IGQIR-LRAQRLNTINS-S 146 (479)
Q Consensus 83 LGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs--------------~~Qi~-~Ra~Rl~~~~~-~ 146 (479)
T Consensus 18 ~~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I-~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 96 (246)
T cd03237 18 EGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-EIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFK 96 (246)
T ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 688465798999997999769999999977878886079-9898205768743325777279999998864312127999
Q ss_pred HHEECCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 000034788999-----------------999973169828997216876654204455636799999999999753079
Q gi|254780334|r 147 VYIAIETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNG 209 (479)
Q Consensus 147 i~~~~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~ 209 (479)
T Consensus 97 ~e~~~~l~l~~~~~r~~~~LSGGqkQRv~iA~aL-~~~p~ilLLDEPt----s~LD-----~~~~~~i~~~i~~l~~~~~ 166 (246)
T cd03237 97 TEIAKPLQIEQILDREVPELSGGELQRVAIAACL-SKDADIYLLDEPS----AYLD-----VEQRLMASKVIRRFAENNE 166 (246)
T ss_pred HHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC-----HHHHHHHHHHHHHHHHHCC
T ss_conf 9999884995676487002898599999999998-4199999984898----7689-----9999999999999998679
Q ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECC
Q ss_conf 7899986303665433114578775302785155
Q gi|254780334|r 210 VAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGG 243 (479)
Q Consensus 210 i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege 243 (479)
T Consensus 167 ~Tvi~VtH--------Dl~~a~~~aDrIivl~G~ 192 (246)
T cd03237 167 KTAFVVEH--------DIIMIDYLADRLIVFEGE 192 (246)
T ss_pred CEEEEECC--------CHHHHHHHCCEEEEECCC
T ss_conf 89999837--------899999869999998188