HHsearch alignment for GI: 254780334 and conserved domain: cd03246
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.21 E-value=3.5e-05 Score=57.39 Aligned_cols=135 Identities=19% Similarity=0.262 Sum_probs=80.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCCHHEECCCCHHHH------
Q ss_conf 85787089995498751889999999998503981999986463-04788887520157751000034788999------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSSVYIAIETNVEDI------ 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i------ 158 (479)
T Consensus 24 ~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~-i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiLSGGQk 102 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCCCHHHH
T ss_conf 98599999999999980999999996666679998-99999993328998984208999088836777589976769999
Q ss_pred ----HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf ----9999731698289972168766542044556367999999999997530797899986303665433114578775
Q gi|254780334|r 159 ----IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMV 234 (479)
Q Consensus 159 ----l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~V 234 (479)
T Consensus 103 QRvalARal-~~~p~ililDEpt----s~LD~~--~e~~i---~~~l~~-l~~~~~Tvi~vtH--------~~~~~~-~a 162 (173)
T cd03246 103 QRLGLARAL-YGNPRILVLDEPN----SHLDVE--GERAL---NQAIAA-LKAAGATRIVIAH--------RPETLA-SA 162 (173)
T ss_pred HHHHHHHHH-HCCCCEEEEECCC----CCCCHH--HHHHH---HHHHHH-HHHCCCEEEEECC--------CHHHHH-HC
T ss_conf 999999998-2799999996876----689989--99999---999997-8648989999847--------999998-49
Q ss_pred HEEEEEE
Q ss_conf 3027851
Q gi|254780334|r 235 DAVLYFE 241 (479)
Q Consensus 235 D~vl~~e 241 (479)
T Consensus 163 D~Iivl~ 169 (173)
T cd03246 163 DRILVLE 169 (173)
T ss_pred CEEEEEE
T ss_conf 9999993