HHsearch alignment for GI: 254780334 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.97 E-value=0.00015 Score=52.76 Aligned_cols=134 Identities=21% Similarity=0.308 Sum_probs=80.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHH-------
Q ss_conf 8578708999549875188999999999850398199998646304788887520157751000034788999-------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDI------- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i------- 158 (479)
T Consensus 24 ~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~-i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSgG 102 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCE-EEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCHH
T ss_conf 98699999999999875999999998617667886-99999988997899997208983556364541998628888999
Q ss_pred ------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHH
Q ss_conf ------99997316982899721687665420445563679999999999975307978999863036654331145787
Q gi|254780334|r 159 ------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEH 232 (479)
Q Consensus 159 ------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH 232 (479)
T Consensus 103 qkqRv~iAral-~~~p~ililDEpt----s~LD~--~t---~~~i~~~l~~~~~--~~Tvi~itH~--------~~~l~~ 162 (178)
T cd03247 103 ERQRLALARIL-LQDAPIVLLDEPT----VGLDP--IT---ERQLLSLIFEVLK--DKTLIWITHH--------LTGIEH 162 (178)
T ss_pred HHHHHHHHHHH-HHCCCEEEECCCC----CCCCH--HH---HHHHHHHHHHHCC--CCEEEEEECC--------HHHHHH
T ss_conf 99999999999-6497976722865----56998--99---9999999999839--9999998058--------989986
Q ss_pred HHHEEEEEE
Q ss_conf 753027851
Q gi|254780334|r 233 MVDAVLYFE 241 (479)
Q Consensus 233 ~VD~vl~~e 241 (479)
T Consensus 163 -~D~Iivl~ 170 (178)
T cd03247 163 -MDKILFLE 170 (178)
T ss_pred -CCEEEEEE
T ss_conf -99999998