HHsearch alignment for GI: 254780334 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.83 E-value=0.00027 Score=50.93 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=29.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
T Consensus 36 ~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G-~I~idg~ 76 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG-QVLLDGK 76 (226)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCE
T ss_conf 9829999999999998499999999645467887-8999999