HHsearch alignment for GI: 254780334 and conserved domain: cd03255
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.69 E-value=0.00044 Score=49.35 Aligned_cols=136 Identities=19% Similarity=0.308 Sum_probs=75.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHH-HHHHHHCCCCCCCHHEECC--------
Q ss_conf 8578708999549875188999999999850398199998646----30478-8887520157751000034--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQI-RLRAQRLNTINSSVYIAIE-------- 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~~~~e-------- 152 (479)
T Consensus 26 ~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig~v~Q~~~L~~~ltV~eni~ 104 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE 104 (218)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 98699899999999986999999996699-99964999999998879989999986504789866752155643999999
Q ss_pred -----------------------CCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf -----------------------788999-----------------9999731698289972168766542044556367
Q gi|254780334|r 153 -----------------------TNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 153 -----------------------~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
T Consensus 105 ~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~LSGG~kQRv~iAra-L~~~P~llllDEPTs----~LD-----~~ 174 (218)
T cd03255 105 LPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA-LANDPKIILADEPTG----NLD-----SE 174 (218)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCC----CCC-----HH
T ss_conf 99998499989999999987676793788738876389999999999999-855999999818887----689-----99
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 175 ~~~~i~~~l~~l~~~~~~tii~itHd--------~~~~~-~aDrv~~m~ 214 (218)
T cd03255 175 TGKEVMELLRELNKEAGTTIVVVTHD--------PELAE-YADRIIELR 214 (218)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHH-HCCEEEEEE
T ss_conf 99999999999999629899998968--------89998-699899998