HHsearch alignment for GI: 254780334 and conserved domain: cd03257

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.92  E-value=0.00022  Score=51.46  Aligned_cols=137  Identities=17%  Similarity=0.271  Sum_probs=78.8

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHH--EECCCCH----
Q ss_conf             8578708999549875188999999999850398199998646----30478888752015775100--0034788----
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVY--IAIETNV----  155 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~--~~~e~~l----  155 (479)
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~ig~v~Q~~~~~l~p~~tv~e~v  105 (228)
T cd03257          27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSG-SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI  105 (228)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHHCCCEEEEECCCHHHCCCCCCHHHHH
T ss_conf             9869989999999998699999999728987886-699899646779999999724637999328134128647499999


Q ss_pred             ------------------------------HHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCC
Q ss_conf             ------------------------------999-----------------999973169828997216876654204455
Q gi|254780334|r  156 ------------------------------EDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSP  188 (479)
Q Consensus       156 ------------------------------~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~  188 (479)
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~p~~LSGGq~QRv~iAra-L~~~P~iLllDEPTs~----LD~--  178 (228)
T cd03257         106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA-LALNPKLLIADEPTSA----LDV--  178 (228)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCC----CCH--
T ss_conf             999998278752899999999997138985998744863279889999998211-0479999999488764----799--


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             63679999999999975307978999863036654331145787753027851
Q gi|254780334|r  189 GTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       189 GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       179 ---~~~~~i~~~l~~l~~~~~~tii~vtH--------d~~~~~~~aDrv~vm~  220 (228)
T cd03257         179 ---SVQAQILDLLKKLQEELGLTLLFITH--------DLGVVAKIADRVAVMY  220 (228)
T ss_pred             ---HHHHHHHHHHHHHHHHCCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf             ---99999999999999850989999868--------9999999699999997