HHsearch alignment for GI: 254780334 and conserved domain: cd03257
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.92 E-value=0.00022 Score=51.46 Aligned_cols=137 Identities=17% Similarity=0.271 Sum_probs=78.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHH--EECCCCH----
Q ss_conf 8578708999549875188999999999850398199998646----30478888752015775100--0034788----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVY--IAIETNV---- 155 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~--~~~e~~l---- 155 (479)
T Consensus 27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~ig~v~Q~~~~~l~p~~tv~e~v 105 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSG-SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI 105 (228)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHHCCCEEEEECCCHHHCCCCCCHHHHH
T ss_conf 9869989999999998699999999728987886-699899646779999999724637999328134128647499999
Q ss_pred ------------------------------HHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCC
Q ss_conf ------------------------------999-----------------999973169828997216876654204455
Q gi|254780334|r 156 ------------------------------EDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSP 188 (479)
Q Consensus 156 ------------------------------~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~ 188 (479)
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~p~~LSGGq~QRv~iAra-L~~~P~iLllDEPTs~----LD~-- 178 (228)
T cd03257 106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA-LALNPKLLIADEPTSA----LDV-- 178 (228)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCC----CCH--
T ss_conf 999998278752899999999997138985998744863279889999998211-0479999999488764----799--
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 63679999999999975307978999863036654331145787753027851
Q gi|254780334|r 189 GTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 189 GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 179 ---~~~~~i~~~l~~l~~~~~~tii~vtH--------d~~~~~~~aDrv~vm~ 220 (228)
T cd03257 179 ---SVQAQILDLLKKLQEELGLTLLFITH--------DLGVVAKIADRVAVMY 220 (228)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf ---99999999999999850989999868--------9999999699999997