>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=97.48 E-value=0.0051 Score=41.59 Aligned_cols=134 Identities=17% Similarity=0.242 Sum_probs=68.9 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCC------------ Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000347------------ Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIET------------ 153 (479) Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~------------ 153 (479) T Consensus 22 ~i~~G-i~gllGpNGAGKSTll~~i~Gl~~p~sG-~i~i~g~~~~~~~~~~~~~iG~vpq~~~l~~~ltv~e~l~~~~~l 99 (211) T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSG-TIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL 99 (211) T ss_pred EECCC-EEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHH T ss_conf 88897-5999999982399999999759668962-999999996618898973079975777689898799999999998 Q ss_pred -------------------CHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf -------------------88999-----------------999973169828997216876654204455636799999 Q gi|254780334|r 154 -------------------NVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479) Q Consensus 154 -------------------~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479) T Consensus 100 ~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrv~ia~-al~~~P~lliLDEPt----~gLD--p~~---~~~~ 169 (211) T cd03264 100 KGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQ-ALVGDPSILIVDEPT----AGLD--PEE---RIRF 169 (211) T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHH-HHHCCCCEEEEECCC----CCCC--HHH---HHHH T ss_conf 59998999999999999869955855954458988999999999-982899999994897----6789--999---9999 Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE Q ss_conf 99999975307978999863036654331145787753027851 Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479) Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479) T Consensus 170 ~~ll~~l~--~~~tii~stH~l~e--------~e~~~dri~il~ 203 (211) T cd03264 170 RNLLSELG--EDRIVILSTHIVED--------VESLCNQVAVLN 203 (211) T ss_pred HHHHHHHC--CCCEEEEECCCHHH--------HHHHCCEEEEEE T ss_conf 99999972--99899998998899--------999699999998

HHsearch alignment for GI: 254780334 and conserved domain: cd03264