HHsearch alignment for GI: 254780334 and conserved domain: cd03268
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.80 E-value=0.00086 Score=47.20 Aligned_cols=135 Identities=16% Similarity=0.278 Sum_probs=74.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCC------------
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000347------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIET------------ 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~------------ 153 (479)
T Consensus 22 ~v~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~~G-~i~i~G~~~~~~~~-~~~~ig~~~~~~~l~~~ltv~e~l~~~~~~ 99 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKNIE-ALRRIGALIEAPGFYPNLTARENLRLLARL 99 (208)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCHH-HHHHEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 8869819999999999999999999578378989-99999999997968-571089994777678988999999999987
Q ss_pred ------CHHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ------88999--------------------------9999731698289972168766542044556367999999999
Q gi|254780334|r 154 ------NVEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 154 ------~l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L 201 (479)
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~-al~~~p~lliLDEPt----~GLD--~~---~~~~i~~~l 169 (208)
T cd03268 100 LGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIAL-ALLGNPDLLILDEPT----NGLD--PD---GIKELRELI 169 (208)
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHH-HHHCCCCEEEEECCC----CCCC--HH---HHHHHHHHH
T ss_conf 4998899999999809950336903569999999999999-985699999993887----6899--99---999999999
Q ss_pred HHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9975307978999863036654331145787753027851
Q gi|254780334|r 202 IQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 202 ~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 170 ~~l-~~~g~til~~sH~l~--------e~~~~~dri~vl~ 200 (208)
T cd03268 170 LSL-RDQGITVLISSHLLS--------EIQKVADRIGIIN 200 (208)
T ss_pred HHH-HHCCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf 999-958999999898689--------9999699999998