>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=97.27 E-value=0.0019 Score=44.78 Aligned_cols=136 Identities=15% Similarity=0.264 Sum_probs=69.2 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH--HHHHHHHHCCCCCCCHHEECC----------- Q ss_conf 8578708999549875188999999999850398199998646304--788887520157751000034----------- Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG--QIRLRAQRLNTINSSVYIAIE----------- 152 (479) Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~--Qi~~Ra~Rl~~~~~~i~~~~e----------- 152 (479) T Consensus 23 ~i~~Ge~~~ilGpSG~GKSTllr~i~gl~-~p~~G~I~i~g~~i~~~~~~~lr-r~ig~vfQ~~~Lfp~ltV~eNi~~~~ 100 (242) T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIREQDPVELR-RKIGYVIQQIGLFPHMTVEENIALVP 100 (242) T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHHH-CCCEEEECCCCCCCCCCHHHHHHHHH T ss_conf 88699899999999956999999997599-99815999999999999978973-88679917997588882999999999 Q ss_pred ---------------------------------CCHH----H--HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH Q ss_conf ---------------------------------7889----9--999997316982899721687665420445563679 Q gi|254780334|r 153 ---------------------------------TNVE----D--IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479) Q Consensus 153 ---------------------------------~~l~----~--il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479) T Consensus 101 ~~~~~~~~~~~~rv~ell~~v~L~~~~~~~~~p~~LSGGqkQRvaiARAl-~~~P~ilLlDEP~----saLD~-----~~ 170 (242) T cd03295 101 KLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL-AADPPLLLMDEPF----GALDP-----IT 170 (242) T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCCH-----HH T ss_conf 97599999999999999987499930110079566899999999999999-6299999981876----54698-----99 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE Q ss_conf 999999999975307978999863036654331145787753027851 Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479) Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479) T Consensus 171 ~~~i~~~l~~l~~~~~~T~i~vTHd--------~~ea~~~aDri~vm~ 210 (242) T cd03295 171 RDQLQEEFKRLQQELGKTIVFVTHD--------IDEAFRLADRIAIMK 210 (242) T ss_pred HHHHHHHHHHHHHHHCCEEEEECCC--------HHHHHHHCCEEEEEE T ss_conf 9999999999999759999999989--------999999699899998

HHsearch alignment for GI: 254780334 and conserved domain: cd03295