HHsearch alignment for GI: 254780334 and conserved domain: pfam02492
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=97.11 E-value=0.0038 Score=42.48 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=49.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEE--------CCCCHHHHHHHHH
Q ss_conf 89995498751889999999998503981999986463047888875201577510000--------3478899999997
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIA--------IETNVEDIIATLI 163 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~--------~e~~l~~il~~~i 163 (479)
T Consensus 2 v~iitGFLGsGKTTll~~ll~~-~~~~~~~avI~Ne~g~~~i--D~~ll~~~~~~v~el~~GciCc~~~~d~~~~l~~l~ 78 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRD-NREGLKIAVIVNDFGETGI--DAELLRETGAEIVELNNGCICCTIREDLSMVLEALL 78 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHHH--HHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 6999348878899999999984-4489847999933653020--799987069618997488664543336999999998
Q ss_pred H--CCCCCEEEECHH
Q ss_conf 3--169828997216
Q gi|254780334|r 164 T--NEKPDLVIIDSI 176 (479)
Q Consensus 164 ~--~~~~~~vVIDSI 176 (479)
T Consensus 79 ~~~~~~~d~iiIE~s 93 (174)
T pfam02492 79 ELKLPRLDLLFIETT 93 (174)
T ss_pred HCCCCCCCEEEEECC
T ss_conf 557899999999587